miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21353 3' -53.3 NC_004778.3 + 44474 0.66 0.959821
Target:  5'- uCgCGGCGCCGcuCGuc-GCUGGCGg -3'
miRNA:   3'- uGgGUUGCGGCuuGUuuaCGACCGCg -5'
21353 3' -53.3 NC_004778.3 + 128793 0.67 0.927802
Target:  5'- aACCgGAuUGUCGAGCAAcgGC-GGCGg -3'
miRNA:   3'- -UGGgUU-GCGGCUUGUUuaCGaCCGCg -5'
21353 3' -53.3 NC_004778.3 + 38621 0.67 0.910284
Target:  5'- cGCCUGaaucACGCCGGguucgcgcguuACAAGUGC-GaGCGCa -3'
miRNA:   3'- -UGGGU----UGCGGCU-----------UGUUUACGaC-CGCG- -5'
21353 3' -53.3 NC_004778.3 + 90965 0.77 0.408563
Target:  5'- uGCCCG--GCCGAGCuGGUaGCUGGCGUa -3'
miRNA:   3'- -UGGGUugCGGCUUGuUUA-CGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 96619 0.66 0.959821
Target:  5'- uGCagCAAUGCCGcguGCAuAUGgaUUGGCGCg -3'
miRNA:   3'- -UGg-GUUGCGGCu--UGUuUAC--GACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 22571 0.66 0.955988
Target:  5'- gUuuGAUGCCGAcGCGcccguAccGCUGGCGCu -3'
miRNA:   3'- uGggUUGCGGCU-UGU-----UuaCGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 10593 0.66 0.955988
Target:  5'- cCUCAACGCCGcGCAAGUuaaUUGGCa- -3'
miRNA:   3'- uGGGUUGCGGCuUGUUUAc--GACCGcg -5'
21353 3' -53.3 NC_004778.3 + 68617 0.66 0.951914
Target:  5'- --gCAACGCCGGcgGCGGcgGCggcGGCGg -3'
miRNA:   3'- uggGUUGCGGCU--UGUUuaCGa--CCGCg -5'
21353 3' -53.3 NC_004778.3 + 21288 0.66 0.947595
Target:  5'- uCCCGACGCCGcAgAGcgGCacgucGGCGa -3'
miRNA:   3'- uGGGUUGCGGCuUgUUuaCGa----CCGCg -5'
21353 3' -53.3 NC_004778.3 + 107924 0.67 0.927802
Target:  5'- aACgCGACGCCGcccGACGAGcGCgacgcGGUGCu -3'
miRNA:   3'- -UGgGUUGCGGC---UUGUUUaCGa----CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 47522 0.66 0.938205
Target:  5'- cGCCCAaaauaACGCCGcACGcuGUGCagcGGCGg -3'
miRNA:   3'- -UGGGU-----UGCGGCuUGUu-UACGa--CCGCg -5'
21353 3' -53.3 NC_004778.3 + 12904 0.66 0.947595
Target:  5'- cCCCAAgcuCGCCcGACAGcgGaaucGGCGCg -3'
miRNA:   3'- uGGGUU---GCGGcUUGUUuaCga--CCGCG- -5'
21353 3' -53.3 NC_004778.3 + 60517 0.66 0.959821
Target:  5'- -aCCAAacCGCUGGA-----GCUGGCGCg -3'
miRNA:   3'- ugGGUU--GCGGCUUguuuaCGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 59189 0.66 0.938205
Target:  5'- -gCCAACGCCGAGCGGuuagccGCcGaCGCa -3'
miRNA:   3'- ugGGUUGCGGCUUGUUua----CGaCcGCG- -5'
21353 3' -53.3 NC_004778.3 + 71218 0.66 0.959821
Target:  5'- -aUCAGgcCGCUGuGCAGcgGCUGGaCGCg -3'
miRNA:   3'- ugGGUU--GCGGCuUGUUuaCGACC-GCG- -5'
21353 3' -53.3 NC_004778.3 + 72647 0.66 0.951914
Target:  5'- cGCUCAACGCCaccGACGGcgGCacuUGGCa- -3'
miRNA:   3'- -UGGGUUGCGGc--UUGUUuaCG---ACCGcg -5'
21353 3' -53.3 NC_004778.3 + 27343 0.67 0.93261
Target:  5'- uGCUgAAcCGCCGGggACAGGUuguuguaGUUGGCGCu -3'
miRNA:   3'- -UGGgUU-GCGGCU--UGUUUA-------CGACCGCG- -5'
21353 3' -53.3 NC_004778.3 + 49207 0.67 0.922218
Target:  5'- uGCCUAAC-CCGGGCGAcccGCUGuGCGa -3'
miRNA:   3'- -UGGGUUGcGGCUUGUUua-CGAC-CGCg -5'
21353 3' -53.3 NC_004778.3 + 75642 0.66 0.959821
Target:  5'- cGCaCUAGCGUUaagGAgcGCAAGUGCaGGUGCg -3'
miRNA:   3'- -UG-GGUUGCGG---CU--UGUUUACGaCCGCG- -5'
21353 3' -53.3 NC_004778.3 + 63628 0.66 0.955988
Target:  5'- cGCCC-GCGCCGAAgAA-----GGCGCu -3'
miRNA:   3'- -UGGGuUGCGGCUUgUUuacgaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.