miRNA display CGI


Results 1 - 20 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 156524 0.66 0.894968
Target:  5'- gCGCCCCG-GcCCGuCCcucgcgagugcGCGCGCGugGCg -3'
miRNA:   3'- -GCGGGGCuCuGGU-GG-----------UGUGUGUugUG- -5'
21374 3' -56.4 NC_004812.1 + 156185 0.72 0.585004
Target:  5'- gCGCgCgCGAGAgCGCCGCGCGCGgaaggccuGCGCg -3'
miRNA:   3'- -GCGgG-GCUCUgGUGGUGUGUGU--------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 156025 0.68 0.801451
Target:  5'- aCG-CCCGGGGCCggggGCCGCGcCGCGGgACg -3'
miRNA:   3'- -GCgGGGCUCUGG----UGGUGU-GUGUUgUG- -5'
21374 3' -56.4 NC_004812.1 + 155877 0.67 0.874314
Target:  5'- cCGCCCCcacccccgccGGCgACCGCGC-CGGCGCc -3'
miRNA:   3'- -GCGGGGcu--------CUGgUGGUGUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 155499 0.68 0.827382
Target:  5'- gGCCCCGgcgaagcgacccGGGCCGCCGgGCAgGAgGa -3'
miRNA:   3'- gCGGGGC------------UCUGGUGGUgUGUgUUgUg -5'
21374 3' -56.4 NC_004812.1 + 155410 0.67 0.859465
Target:  5'- cCGCCCCc-GGCCgaGCUACAUauaccggaguGCAGCGCa -3'
miRNA:   3'- -GCGGGGcuCUGG--UGGUGUG----------UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 155328 0.7 0.706503
Target:  5'- cCGCCCUcGGACCGCCcGCcCGCGGCcgGCg -3'
miRNA:   3'- -GCGGGGcUCUGGUGG-UGuGUGUUG--UG- -5'
21374 3' -56.4 NC_004812.1 + 155284 0.67 0.859465
Target:  5'- cCGCCCgCG-GACCGCC-CGCGgAcCGCc -3'
miRNA:   3'- -GCGGG-GCuCUGGUGGuGUGUgUuGUG- -5'
21374 3' -56.4 NC_004812.1 + 154979 0.66 0.907
Target:  5'- gGCCgCgCGGGACC-CgCGCGCACGgucccucGCGCg -3'
miRNA:   3'- gCGG-G-GCUCUGGuG-GUGUGUGU-------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 154806 0.73 0.525235
Target:  5'- gGCCCCGAcGuCCGCCAUGCuGCGGCGg -3'
miRNA:   3'- gCGGGGCU-CuGGUGGUGUG-UGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 154608 0.71 0.656125
Target:  5'- gCGCCCCGAgcGACCGCCG-GCGgGACcCg -3'
miRNA:   3'- -GCGGGGCU--CUGGUGGUgUGUgUUGuG- -5'
21374 3' -56.4 NC_004812.1 + 154528 0.69 0.745736
Target:  5'- cCGCCCCGAgGACUGgUAgACGCGggggGCGCg -3'
miRNA:   3'- -GCGGGGCU-CUGGUgGUgUGUGU----UGUG- -5'
21374 3' -56.4 NC_004812.1 + 154443 0.66 0.894968
Target:  5'- cCGCCgCCGuggagguGGCCGCCGC-CGCGAgcccCGCc -3'
miRNA:   3'- -GCGG-GGCu------CUGGUGGUGuGUGUU----GUG- -5'
21374 3' -56.4 NC_004812.1 + 154379 0.68 0.810257
Target:  5'- -cCCCCGAGACCcCCACcucgGCGGCGg -3'
miRNA:   3'- gcGGGGCUCUGGuGGUGug--UGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 154272 0.69 0.764798
Target:  5'- aCGCCCU---GCCGCC-CGCGCuGCGCg -3'
miRNA:   3'- -GCGGGGcucUGGUGGuGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 154125 0.81 0.183628
Target:  5'- cCGCCCgCGAGGCCGCCGcCGC-CGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUGGUGGU-GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 154064 0.67 0.843803
Target:  5'- cCGCCgCgCGAGuACCGCCGCGC-CGugcugcccGCGCu -3'
miRNA:   3'- -GCGG-G-GCUC-UGGUGGUGUGuGU--------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 153983 0.67 0.843803
Target:  5'- cCGCCgCCGcgccuGGGCCGCgGCGC-CAACGu -3'
miRNA:   3'- -GCGG-GGC-----UCUGGUGgUGUGuGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 153943 0.74 0.477261
Target:  5'- gCGCgUCGAGGCCGCCuGCGCGCGccucuacccggACGCg -3'
miRNA:   3'- -GCGgGGCUCUGGUGG-UGUGUGU-----------UGUG- -5'
21374 3' -56.4 NC_004812.1 + 153864 0.69 0.755321
Target:  5'- aCGUCCgCuGGcCCGCCGCGCGCGACcuGCg -3'
miRNA:   3'- -GCGGG-GcUCuGGUGGUGUGUGUUG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.