miRNA display CGI


Results 1 - 20 of 796 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21374 3' -56.4 NC_004812.1 + 149713 1.1 0.00229
Target:  5'- gCGCCCCGAGACCACCACACACAACACg -3'
miRNA:   3'- -GCGGGGCUCUGGUGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 54696 0.77 0.333183
Target:  5'- gGCCCCGAGGCCcgaccGCCGCGCcucGgGGCGCc -3'
miRNA:   3'- gCGGGGCUCUGG-----UGGUGUG---UgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 52593 0.77 0.340723
Target:  5'- gGCCCCGAGGCCguacGCCACGgGCcgccucagccaGGCGCa -3'
miRNA:   3'- gCGGGGCUCUGG----UGGUGUgUG-----------UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 100276 0.65 0.911816
Target:  5'- aCGCCuCCGGGuucucggaggcggcGCgCGCgCGCGCGCuGCGCg -3'
miRNA:   3'- -GCGG-GGCUC--------------UG-GUG-GUGUGUGuUGUG- -5'
21374 3' -56.4 NC_004812.1 + 12441 0.83 0.14259
Target:  5'- uCGUCUCGAuGGCCGCCGCGCACAcACACg -3'
miRNA:   3'- -GCGGGGCU-CUGGUGGUGUGUGU-UGUG- -5'
21374 3' -56.4 NC_004812.1 + 148977 0.83 0.14259
Target:  5'- gCGCCCCGAccccGGCCGCCGCGCGucucCGGCGCg -3'
miRNA:   3'- -GCGGGGCU----CUGGUGGUGUGU----GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 28617 0.81 0.183628
Target:  5'- cCGCCCgCGAGGCCGCCGcCGC-CGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUGGUGGU-GUGuGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 9108 0.81 0.202787
Target:  5'- gCGCCUCGGGGCCACCGgACccccGCGGCGCc -3'
miRNA:   3'- -GCGGGGCUCUGGUGGUgUG----UGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 120816 0.79 0.252283
Target:  5'- gGCCCCGAGACgCACUuCACGCAGUACc -3'
miRNA:   3'- gCGGGGCUCUG-GUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 80004 0.77 0.318474
Target:  5'- gGCCguguCCGAGGCCaucGCCGCGgGCAGCGCg -3'
miRNA:   3'- gCGG----GGCUCUGG---UGGUGUgUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 43393 0.78 0.290534
Target:  5'- gCGCUCCGAGAUgGaCCGCAgCGCGGCGCg -3'
miRNA:   3'- -GCGGGGCUCUGgU-GGUGU-GUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 27688 0.8 0.229153
Target:  5'- uGCCgCCGGGGCCcaGCCACACGcCGGCGCc -3'
miRNA:   3'- gCGG-GGCUCUGG--UGGUGUGU-GUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 132793 0.86 0.099158
Target:  5'- gGCCCCGGGucGCCGCCcCGCGCGGCGCg -3'
miRNA:   3'- gCGGGGCUC--UGGUGGuGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 119155 0.78 0.290534
Target:  5'- cCGCCCCGcGGACUggACCACGCACcACAa -3'
miRNA:   3'- -GCGGGGC-UCUGG--UGGUGUGUGuUGUg -5'
21374 3' -56.4 NC_004812.1 + 58185 0.84 0.128656
Target:  5'- cCGCCCCGcGGCCGCCGCACcgaGACGCu -3'
miRNA:   3'- -GCGGGGCuCUGGUGGUGUGug-UUGUG- -5'
21374 3' -56.4 NC_004812.1 + 31297 0.81 0.206314
Target:  5'- gCGCCCCGccccccacgcgcgcAGGCCuuCCGCGCGCGGCGCu -3'
miRNA:   3'- -GCGGGGC--------------UCUGGu-GGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 46896 0.77 0.318474
Target:  5'- gCGCCCCGGGgcgggcgcggcgGCCGCCGC-CGCGGCGg -3'
miRNA:   3'- -GCGGGGCUC------------UGGUGGUGuGUGUUGUg -5'
21374 3' -56.4 NC_004812.1 + 126429 0.77 0.333183
Target:  5'- uGCCCCccAGGCaGCCGCGCGCGGCACc -3'
miRNA:   3'- gCGGGGc-UCUGgUGGUGUGUGUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 11289 0.83 0.138982
Target:  5'- aCGCCCaCGAGGCgCGCCGCGCGgGGCGCc -3'
miRNA:   3'- -GCGGG-GCUCUG-GUGGUGUGUgUUGUG- -5'
21374 3' -56.4 NC_004812.1 + 57207 0.82 0.161942
Target:  5'- gCGCCCCGAcGACCccaGCCGC-CGCAGCGCc -3'
miRNA:   3'- -GCGGGGCU-CUGG---UGGUGuGUGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.