miRNA display CGI


Results 1 - 20 of 337 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21375 3' -57 NC_004812.1 + 127903 0.65 0.885107
Target:  5'- cGGCGCGGGGcGGcggucgcgaaauccAGGAaGGGcacgcGAAGCGCGu -3'
miRNA:   3'- -UCGCGCUCC-CC--------------UCCU-CCU-----CUUUGUGU- -5'
21375 3' -57 NC_004812.1 + 78793 0.66 0.880233
Target:  5'- uGGCGCGGGGcGuGGAcgcGGucgcGAGGCGCAg -3'
miRNA:   3'- -UCGCGCUCCcCuCCU---CCu---CUUUGUGU- -5'
21375 3' -57 NC_004812.1 + 71358 0.66 0.880233
Target:  5'- gGGCGUGGGuaGGGAGGAagugggcguGGGGAcGgGCGa -3'
miRNA:   3'- -UCGCGCUC--CCCUCCU---------CCUCUuUgUGU- -5'
21375 3' -57 NC_004812.1 + 106790 0.66 0.880233
Target:  5'- gGGCGCGc-GGGAGGGGGccucGCGCc -3'
miRNA:   3'- -UCGCGCucCCCUCCUCCucuuUGUGu -5'
21375 3' -57 NC_004812.1 + 105603 0.66 0.875971
Target:  5'- cAGCGCGgcgaucugcgcuuccAGGGGAcuGGGGcccGGAAACACc -3'
miRNA:   3'- -UCGCGC---------------UCCCCU--CCUCc--UCUUUGUGu -5'
21375 3' -57 NC_004812.1 + 122293 0.66 0.873086
Target:  5'- cGGCGCcgGAGGGccgccGGGGGGAGgcGgGCGg -3'
miRNA:   3'- -UCGCG--CUCCCc----UCCUCCUCuuUgUGU- -5'
21375 3' -57 NC_004812.1 + 146652 0.66 0.873086
Target:  5'- uGUGgGuGGGGAGGGgagcguuggaccGGAGGcaagAGCACAu -3'
miRNA:   3'- uCGCgCuCCCCUCCU------------CCUCU----UUGUGU- -5'
21375 3' -57 NC_004812.1 + 153194 0.66 0.873086
Target:  5'- cGGCGCcgGAGGGccgccGGGGGGAGgcGgGCGg -3'
miRNA:   3'- -UCGCG--CUCCCc----UCCUCCUCuuUgUGU- -5'
21375 3' -57 NC_004812.1 + 114912 0.66 0.873086
Target:  5'- cGCaGCGAGGuGAGGuacuGGGcGAGGCACu -3'
miRNA:   3'- uCG-CGCUCCcCUCCu---CCU-CUUUGUGu -5'
21375 3' -57 NC_004812.1 + 26031 0.66 0.873086
Target:  5'- cGGCGaCGGcGGGGccGGGGccGGggGCGCGg -3'
miRNA:   3'- -UCGC-GCU-CCCCucCUCC--UCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 102895 0.66 0.873086
Target:  5'- uGCGCGGGGcGGcGGAccggcgccucGGGGggGCGg- -3'
miRNA:   3'- uCGCGCUCC-CCuCCU----------CCUCuuUGUgu -5'
21375 3' -57 NC_004812.1 + 151540 0.66 0.873086
Target:  5'- cGGCGaCGGcGGGGccGGGGccGGggGCGCGg -3'
miRNA:   3'- -UCGC-GCU-CCCCucCUCC--UCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 27801 0.66 0.873086
Target:  5'- gAGgGCG-GGGccGGGGGGGGAGCGgGg -3'
miRNA:   3'- -UCgCGCuCCCcuCCUCCUCUUUGUgU- -5'
21375 3' -57 NC_004812.1 + 143864 0.66 0.872359
Target:  5'- uGCGCGAgcuguucGGGGAGGcguucgAGGGGGcgccguucGGCACc -3'
miRNA:   3'- uCGCGCU-------CCCCUCC------UCCUCU--------UUGUGu -5'
21375 3' -57 NC_004812.1 + 152774 0.66 0.865725
Target:  5'- cGGCGCaGAGGGGcGGGgccuGGGGcGggGcCGCAg -3'
miRNA:   3'- -UCGCG-CUCCCC-UCC----UCCU-CuuU-GUGU- -5'
21375 3' -57 NC_004812.1 + 25573 0.66 0.865725
Target:  5'- cGaCGaCGAcGGGGAGGAcGGcGGGGACGCc -3'
miRNA:   3'- uC-GC-GCU-CCCCUCCU-CC-UCUUUGUGu -5'
21375 3' -57 NC_004812.1 + 37163 0.66 0.865725
Target:  5'- -cCGCGGucGGGGGGGAGcuagggccAGggGCACGg -3'
miRNA:   3'- ucGCGCU--CCCCUCCUCc-------UCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 71124 0.66 0.865725
Target:  5'- aGGCGCGGGcgccucGGGGGuucGGGGgcGCGCGa -3'
miRNA:   3'- -UCGCGCUCc-----CCUCCu--CCUCuuUGUGU- -5'
21375 3' -57 NC_004812.1 + 38417 0.66 0.865725
Target:  5'- gAGCGaaaGGaGGGAGGGGGGGcgGCGa- -3'
miRNA:   3'- -UCGCg--CUcCCCUCCUCCUCuuUGUgu -5'
21375 3' -57 NC_004812.1 + 6650 0.66 0.865725
Target:  5'- gGGgGUGGGGGaGAuGGGGGAG-AGCGgGg -3'
miRNA:   3'- -UCgCGCUCCC-CU-CCUCCUCuUUGUgU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.