miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21376 5' -56.5 NC_004812.1 + 72124 0.66 0.908617
Target:  5'- cCGGUGGaGGcGGGUCgG-GAGGGuGCGg -3'
miRNA:   3'- uGUCAUC-CC-CUCAGgCaCUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 7491 0.66 0.908617
Target:  5'- -gGGaUGGGGGGGggaCgGUGGGccGGAGCGa -3'
miRNA:   3'- ugUC-AUCCCCUCa--GgCACUC--UCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 153448 0.66 0.908617
Target:  5'- -gGGgcGGGGGG-CgCGgGGGGGGGCGg -3'
miRNA:   3'- ugUCauCCCCUCaG-GCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 38392 0.66 0.908617
Target:  5'- -gGGaUGGGGGGGggaCgGUGGGccGGAGCGa -3'
miRNA:   3'- ugUC-AUCCCCUCa--GgCACUC--UCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 122547 0.66 0.908617
Target:  5'- -gGGgcGGGGGG-CgCGgGGGGGGGCGg -3'
miRNA:   3'- ugUCauCCCCUCaG-GCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 70880 0.66 0.902455
Target:  5'- uGCGcgGGGGGGG-CgGgGAGGGGGCGg -3'
miRNA:   3'- -UGUcaUCCCCUCaGgCaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 5709 0.66 0.896062
Target:  5'- cACGGgggGGcGGGGGUCUGccgcggGAGgAGGGCGc -3'
miRNA:   3'- -UGUCa--UC-CCCUCAGGCa-----CUC-UCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 137987 0.66 0.896062
Target:  5'- uCGGgggGGGGGGGgggggGGGGGAGCGg -3'
miRNA:   3'- uGUCa--UCCCCUCaggcaCUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 36610 0.66 0.896062
Target:  5'- cACGGgggGGcGGGGGUCUGccgcggGAGgAGGGCGc -3'
miRNA:   3'- -UGUCa--UC-CCCUCAGGCa-----CUC-UCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 70272 0.66 0.896062
Target:  5'- cGCGGUGGGGGGcaacucguuGUCCGgggcguugucGAGAucGCGg -3'
miRNA:   3'- -UGUCAUCCCCU---------CAGGCa---------CUCUcuCGC- -5'
21376 5' -56.5 NC_004812.1 + 18435 0.66 0.889441
Target:  5'- cGCGGcGGGGGccgcGUCCGguggcgcggcGGGGGGGCGc -3'
miRNA:   3'- -UGUCaUCCCCu---CAGGCa---------CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 8184 0.66 0.889441
Target:  5'- -gGGUccGGGccGGGGUCCGgccGAGAGCGg -3'
miRNA:   3'- ugUCA--UCC--CCUCAGGCacuCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 16559 0.66 0.889441
Target:  5'- uCGGggAGGaGGAG-CUGUGGGAG-GCGa -3'
miRNA:   3'- uGUCa-UCC-CCUCaGGCACUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 39085 0.66 0.889441
Target:  5'- -gGGUccGGGccGGGGUCCGgccGAGAGCGg -3'
miRNA:   3'- ugUCA--UCC--CCUCAGGCacuCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 152649 0.66 0.889441
Target:  5'- cGCGGcGGGGGGGcgCCGggccuccGGGAG-GCGg -3'
miRNA:   3'- -UGUCaUCCCCUCa-GGCa------CUCUCuCGC- -5'
21376 5' -56.5 NC_004812.1 + 101406 0.66 0.887411
Target:  5'- -uGGUAGGGGGucGUCCGcagcuggcggucggUGAGcucgcGGAGCGc -3'
miRNA:   3'- ugUCAUCCCCU--CAGGC--------------ACUC-----UCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 148716 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 148639 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 148587 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5'
21376 5' -56.5 NC_004812.1 + 23182 0.66 0.88673
Target:  5'- cGCGGgggAGGGGAGggcgaggggugcgCgGgggagGGGAGGGCGa -3'
miRNA:   3'- -UGUCa--UCCCCUCa------------GgCa----CUCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.