miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 3' -57 NC_004812.1 + 1012 0.66 0.877838
Target:  5'- cGGCcggGGCCGCGcC-CCCGCGaggGCCc -3'
miRNA:   3'- cUUGua-CCGGCGCaGaGGGCGU---UGGu -5'
21378 3' -57 NC_004812.1 + 114034 0.66 0.877838
Target:  5'- --cCGUcGGCgCGCGcgucgCUCCCGaCGGCCAc -3'
miRNA:   3'- cuuGUA-CCG-GCGCa----GAGGGC-GUUGGU- -5'
21378 3' -57 NC_004812.1 + 72879 0.66 0.877838
Target:  5'- cAGCcgGGcCCGCGUC-CCCgGCAgaaACCc -3'
miRNA:   3'- cUUGuaCC-GGCGCAGaGGG-CGU---UGGu -5'
21378 3' -57 NC_004812.1 + 9381 0.66 0.877838
Target:  5'- uGAACuucGUGGCCGCG-CUggcgcCCCGCcuacaGACCc -3'
miRNA:   3'- -CUUG---UACCGGCGCaGA-----GGGCG-----UUGGu -5'
21378 3' -57 NC_004812.1 + 126521 0.66 0.877838
Target:  5'- cGGCcggGGCCGCGcC-CCCGCGaggGCCc -3'
miRNA:   3'- cUUGua-CCGGCGCaGaGGGCGU---UGGu -5'
21378 3' -57 NC_004812.1 + 102214 0.66 0.877838
Target:  5'- uGAGCAgccccGGCCGUGcccgCgggcgCCCGaCGGCCAg -3'
miRNA:   3'- -CUUGUa----CCGGCGCa---Ga----GGGC-GUUGGU- -5'
21378 3' -57 NC_004812.1 + 62004 0.66 0.877838
Target:  5'- --cCAggGGCCGCGgCUCgaCCGCAcgGCCGg -3'
miRNA:   3'- cuuGUa-CCGGCGCaGAG--GGCGU--UGGU- -5'
21378 3' -57 NC_004812.1 + 59668 0.66 0.877838
Target:  5'- aGGCGU-GCCGCGUCUCCagguCGCAGa-- -3'
miRNA:   3'- cUUGUAcCGGCGCAGAGG----GCGUUggu -5'
21378 3' -57 NC_004812.1 + 147237 0.66 0.877838
Target:  5'- aGGGCGUGGCCGagGUCUucgaggaaaCCgGCGGCgAa -3'
miRNA:   3'- -CUUGUACCGGCg-CAGA---------GGgCGUUGgU- -5'
21378 3' -57 NC_004812.1 + 98582 0.66 0.875691
Target:  5'- cAGCAcgagGGgCGCGUCcgucaggucgucgcUCCCGUGGCCGu -3'
miRNA:   3'- cUUGUa---CCgGCGCAG--------------AGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 136013 0.66 0.870607
Target:  5'- -cGCA-GGCgCGCGUC-CUCGCcACCGg -3'
miRNA:   3'- cuUGUaCCG-GCGCAGaGGGCGuUGGU- -5'
21378 3' -57 NC_004812.1 + 18638 0.66 0.870607
Target:  5'- aGACGcGGCCGCccccGUCUC-CGCAgacgGCCAu -3'
miRNA:   3'- cUUGUaCCGGCG----CAGAGgGCGU----UGGU- -5'
21378 3' -57 NC_004812.1 + 40410 0.66 0.870607
Target:  5'- cGAGCcaGGCCGCGUaguagCCCGCcACg- -3'
miRNA:   3'- -CUUGuaCCGGCGCAga---GGGCGuUGgu -5'
21378 3' -57 NC_004812.1 + 94758 0.66 0.870607
Target:  5'- cGGCGcUGGCCGCcgaGUUcgCCCGCGuCCAc -3'
miRNA:   3'- cUUGU-ACCGGCG---CAGa-GGGCGUuGGU- -5'
21378 3' -57 NC_004812.1 + 69040 0.66 0.870607
Target:  5'- cAGCAUGGCgGgCGUCgagggcacgaUCUCGUGGCCGu -3'
miRNA:   3'- cUUGUACCGgC-GCAG----------AGGGCGUUGGU- -5'
21378 3' -57 NC_004812.1 + 126360 0.66 0.870607
Target:  5'- gGGGCGUGGUgGCacUUCCCcaGCGGCCAg -3'
miRNA:   3'- -CUUGUACCGgCGcaGAGGG--CGUUGGU- -5'
21378 3' -57 NC_004812.1 + 15927 0.66 0.863163
Target:  5'- -----cGGCCGCgGUCgacCCCGCccuGCCGg -3'
miRNA:   3'- cuuguaCCGGCG-CAGa--GGGCGu--UGGU- -5'
21378 3' -57 NC_004812.1 + 38892 0.66 0.863163
Target:  5'- cGGGCGccGGUCagggggGCG-CUCCCGCGACCc -3'
miRNA:   3'- -CUUGUa-CCGG------CGCaGAGGGCGUUGGu -5'
21378 3' -57 NC_004812.1 + 58373 0.66 0.863163
Target:  5'- --cCAgGGCCGCGcCgcCCCGCGgagACCAg -3'
miRNA:   3'- cuuGUaCCGGCGCaGa-GGGCGU---UGGU- -5'
21378 3' -57 NC_004812.1 + 70002 0.66 0.863163
Target:  5'- uGGGCAaccGcGCCGCGg--CCCGCAACUu -3'
miRNA:   3'- -CUUGUa--C-CGGCGCagaGGGCGUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.