miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21378 5' -58.4 NC_004812.1 + 132799 0.66 0.851587
Target:  5'- gGGUCgccgCCccgcGCGGCgcgcauggaGCCGCGcACG-CGUCg -3'
miRNA:   3'- -UCAGa---GG----UGCCG---------UGGCGC-UGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 79248 0.66 0.851587
Target:  5'- cGUCg-CugGGCgacGCCGCGGgccaggggcuCGUCGUCc -3'
miRNA:   3'- uCAGagGugCCG---UGGCGCU----------GCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 2335 0.66 0.851587
Target:  5'- gGGUCUCCGCGGaggACgGgGgGCG-CGUCc -3'
miRNA:   3'- -UCAGAGGUGCCg--UGgCgC-UGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 7863 0.66 0.851587
Target:  5'- cGGUCguaGCGGCGCCccGCG-CGUCG-Cg -3'
miRNA:   3'- -UCAGaggUGCCGUGG--CGCuGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 148373 0.66 0.851587
Target:  5'- uAGUCgucgaCCGCGGCcagguACCGgGACGacauUCGUg -3'
miRNA:   3'- -UCAGa----GGUGCCG-----UGGCgCUGC----AGCAg -5'
21378 5' -58.4 NC_004812.1 + 8444 0.66 0.851587
Target:  5'- --cUUCCGCuccCACCGCcGCGUCGUCc -3'
miRNA:   3'- ucaGAGGUGcc-GUGGCGcUGCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 38764 0.66 0.851587
Target:  5'- cGGUCguaGCGGCGCCccGCG-CGUCG-Cg -3'
miRNA:   3'- -UCAGaggUGCCGUGG--CGCuGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 141463 0.66 0.851587
Target:  5'- --aCUCgCuCGGCgacgGCUGCGACGUCGcCg -3'
miRNA:   3'- ucaGAG-GuGCCG----UGGCGCUGCAGCaG- -5'
21378 5' -58.4 NC_004812.1 + 33236 0.66 0.851587
Target:  5'- gGGUCUCCGCGGaggACgGgGgGCG-CGUCc -3'
miRNA:   3'- -UCAGAGGUGCCg--UGgCgC-UGCaGCAG- -5'
21378 5' -58.4 NC_004812.1 + 35992 0.66 0.849275
Target:  5'- cGUCUCCACgaugaggcgcuccaGGCugCgguggcgggcgGCGAUGUCGg- -3'
miRNA:   3'- uCAGAGGUG--------------CCGugG-----------CGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 126927 0.66 0.843815
Target:  5'- cGUC-CCugGCGGUuucUCGCGGCGUCGg- -3'
miRNA:   3'- uCAGaGG--UGCCGu--GGCGCUGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 83153 0.66 0.843815
Target:  5'- cGUcCUCCGacccccUGGCGCCGUGGCGcgCGg- -3'
miRNA:   3'- uCA-GAGGU------GCCGUGGCGCUGCa-GCag -5'
21378 5' -58.4 NC_004812.1 + 139851 0.66 0.843815
Target:  5'- cGUCUucgggcCCGCGGCccCCGgGGCGcccugCGUCg -3'
miRNA:   3'- uCAGA------GGUGCCGu-GGCgCUGCa----GCAG- -5'
21378 5' -58.4 NC_004812.1 + 129669 0.66 0.843028
Target:  5'- cGGcgCUgCGCGGCGaugacgcCCGCGGCGcCGUa -3'
miRNA:   3'- -UCa-GAgGUGCCGU-------GGCGCUGCaGCAg -5'
21378 5' -58.4 NC_004812.1 + 96713 0.66 0.843028
Target:  5'- cGGggUCCGCGGCggcgauagggcucGCCGUGgGCGUCGg- -3'
miRNA:   3'- -UCagAGGUGCCG-------------UGGCGC-UGCAGCag -5'
21378 5' -58.4 NC_004812.1 + 4160 0.66 0.843028
Target:  5'- cGGcgCUgCGCGGCGaugacgcCCGCGGCGcCGUa -3'
miRNA:   3'- -UCa-GAgGUGCCGU-------GGCGCUGCaGCAg -5'
21378 5' -58.4 NC_004812.1 + 88494 0.66 0.835861
Target:  5'- cGUCgCCGCGGcCGCCGaGACGUuCGcCc -3'
miRNA:   3'- uCAGaGGUGCC-GUGGCgCUGCA-GCaG- -5'
21378 5' -58.4 NC_004812.1 + 101494 0.66 0.835861
Target:  5'- gGGUC-CgGCGGUagaagACCGCcGgGUCGUCg -3'
miRNA:   3'- -UCAGaGgUGCCG-----UGGCGcUgCAGCAG- -5'
21378 5' -58.4 NC_004812.1 + 65756 0.66 0.835861
Target:  5'- cGcCUCCGCGGCgccggcuuccgcGCCGCgGGCGcCGg- -3'
miRNA:   3'- uCaGAGGUGCCG------------UGGCG-CUGCaGCag -5'
21378 5' -58.4 NC_004812.1 + 128163 0.66 0.835861
Target:  5'- gGGUCg-CGCGGCGCUGCGuCGgCGcCu -3'
miRNA:   3'- -UCAGagGUGCCGUGGCGCuGCaGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.