miRNA display CGI


Results 21 - 40 of 272 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21380 5' -57.3 NC_004812.1 + 142617 0.67 0.801557
Target:  5'- uCAGCCucgugucGGAcUCGCuccUGGCCGCCGGGg -3'
miRNA:   3'- uGUCGG-------UCU-AGCGcc-ACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 142381 0.73 0.47162
Target:  5'- uCAcCCGGcgCGCcGUGGCCGCCGGGg -3'
miRNA:   3'- uGUcGGUCuaGCGcCACUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 142193 0.72 0.518936
Target:  5'- -uGGCCGGcgCGgGGcUGGCCGCCGGc -3'
miRNA:   3'- ugUCGGUCuaGCgCC-ACUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 141783 0.68 0.747291
Target:  5'- aACGGCCg---CGCGGgggggcgGGCCGCgCGGGg -3'
miRNA:   3'- -UGUCGGucuaGCGCCa------CUGGUG-GUCC- -5'
21380 5' -57.3 NC_004812.1 + 139745 0.67 0.82727
Target:  5'- cGCcGaCCAGGUCGCGGUcccccgcGACCGCgcgccuaAGGg -3'
miRNA:   3'- -UGuC-GGUCUAGCGCCA-------CUGGUGg------UCC- -5'
21380 5' -57.3 NC_004812.1 + 139445 0.67 0.81971
Target:  5'- gACAGCC-GAUgG-GG-GAgCACCAGGg -3'
miRNA:   3'- -UGUCGGuCUAgCgCCaCUgGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 139113 0.7 0.668591
Target:  5'- cGCGGCUGGGgccggCGCGGaagagGGCCGUCAGGa -3'
miRNA:   3'- -UGUCGGUCUa----GCGCCa----CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 137804 0.67 0.81971
Target:  5'- gGCGGCgAGGgcgcCGCGGagcaggcccccUGGCC-CCGGGa -3'
miRNA:   3'- -UGUCGgUCUa---GCGCC-----------ACUGGuGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 137551 0.67 0.844357
Target:  5'- -gGGCCuGGGcCGCGGUcucGGCCGCCGcGGc -3'
miRNA:   3'- ugUCGG-UCUaGCGCCA---CUGGUGGU-CC- -5'
21380 5' -57.3 NC_004812.1 + 137046 0.68 0.793572
Target:  5'- -uGGCCGGG--GUGGUGGCCgGCCuGGg -3'
miRNA:   3'- ugUCGGUCUagCGCCACUGG-UGGuCC- -5'
21380 5' -57.3 NC_004812.1 + 136690 0.66 0.852207
Target:  5'- uCGGCCGccggCGCGGUGgcggcggcgcggGCCGCCGGu -3'
miRNA:   3'- uGUCGGUcua-GCGCCAC------------UGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 133531 0.69 0.737705
Target:  5'- aGCAGC---GUCGCgugGGUGGCCACCAugcGGg -3'
miRNA:   3'- -UGUCGgucUAGCG---CCACUGGUGGU---CC- -5'
21380 5' -57.3 NC_004812.1 + 133438 0.67 0.798909
Target:  5'- uGCAGCacguacaCGGUGugCGCCAGGg -3'
miRNA:   3'- -UGUCGgucuagcGCCACugGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 133148 0.66 0.881608
Target:  5'- cCAGCaggaGGAcgacgagCGCGGcaaacgcGGCCGCCAGGc -3'
miRNA:   3'- uGUCGg---UCUa------GCGCCa------CUGGUGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 132103 0.67 0.828101
Target:  5'- cGCAGCCcccgcggCGCGGgGGCCccccguCCAGGa -3'
miRNA:   3'- -UGUCGGucua---GCGCCaCUGGu-----GGUCC- -5'
21380 5' -57.3 NC_004812.1 + 130920 0.66 0.881608
Target:  5'- uGCGGCUAGAcugUCagucggcgGCGGUGAUguUCGGGc -3'
miRNA:   3'- -UGUCGGUCU---AG--------CGCCACUGguGGUCC- -5'
21380 5' -57.3 NC_004812.1 + 129482 0.68 0.784565
Target:  5'- gGCGGCCAGGUCGCcgccGUaGCCcucgGCCAGc -3'
miRNA:   3'- -UGUCGGUCUAGCGc---CAcUGG----UGGUCc -5'
21380 5' -57.3 NC_004812.1 + 129447 0.69 0.718273
Target:  5'- gGCGGCaCGGcgCGCGc-GGCCGCCAGc -3'
miRNA:   3'- -UGUCG-GUCuaGCGCcaCUGGUGGUCc -5'
21380 5' -57.3 NC_004812.1 + 129399 0.7 0.668591
Target:  5'- cGCAGCCAGAggCGCGGgcgcGGCgGCgCGGcGg -3'
miRNA:   3'- -UGUCGGUCUa-GCGCCa---CUGgUG-GUC-C- -5'
21380 5' -57.3 NC_004812.1 + 128603 0.67 0.835506
Target:  5'- gGCAGCuCGGGUcagccccCGCGGUacGCC-CCGGGg -3'
miRNA:   3'- -UGUCG-GUCUA-------GCGCCAc-UGGuGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.