miRNA display CGI


Results 21 - 40 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 151709 0.67 0.726298
Target:  5'- ---aGCGGCGGCgCGCGcGCgccgccguggccGGGCGCGa -3'
miRNA:   3'- aaagCGCCGUUG-GUGCaCG------------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 151152 0.69 0.624822
Target:  5'- --cCGUGGC--CCugGUggGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGuuGGugCA--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 151035 0.69 0.624822
Target:  5'- --cCGUGGC--CCugGUggGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGuuGGugCA--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 150384 0.71 0.484928
Target:  5'- --cCGCGG-GGCCGCGgcgGCAGGgGCGg -3'
miRNA:   3'- aaaGCGCCgUUGGUGCa--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 150298 0.68 0.6963
Target:  5'- --cCGgGGCcccCCGCGUGCccggGGGCGCc -3'
miRNA:   3'- aaaGCgCCGuu-GGUGCACG----UCCGCGu -5'
21382 3' -58 NC_004812.1 + 149095 0.67 0.745905
Target:  5'- ---gGCGGCGcGCCGCGggGCGGGgGUu -3'
miRNA:   3'- aaagCGCCGU-UGGUGCa-CGUCCgCGu -5'
21382 3' -58 NC_004812.1 + 148935 0.67 0.726298
Target:  5'- --gCGuCGGCGACgACGgugGUcgGGGCGCGa -3'
miRNA:   3'- aaaGC-GCCGUUGgUGCa--CG--UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 148825 0.7 0.553575
Target:  5'- --cCGCGGCcuacacGGCCGCGccGCAcGGCGCGc -3'
miRNA:   3'- aaaGCGCCG------UUGGUGCa-CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 148546 0.66 0.802025
Target:  5'- --gCGCGGCGGggUCGCGggccgGcCGGGCGCc -3'
miRNA:   3'- aaaGCGCCGUU--GGUGCa----C-GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 148267 0.66 0.77454
Target:  5'- --gUGgGGCGGCCGCGcccgGCAG-CGCGg -3'
miRNA:   3'- aaaGCgCCGUUGGUGCa---CGUCcGCGU- -5'
21382 3' -58 NC_004812.1 + 147972 0.68 0.706366
Target:  5'- --cCGCGGC-GCUcCGUGCucauGGCGCc -3'
miRNA:   3'- aaaGCGCCGuUGGuGCACGu---CCGCGu -5'
21382 3' -58 NC_004812.1 + 147857 0.66 0.783841
Target:  5'- -cUCGCGGCuGCCugGgggGUcggggccgucgAGGCGUu -3'
miRNA:   3'- aaAGCGCCGuUGGugCa--CG-----------UCCGCGu -5'
21382 3' -58 NC_004812.1 + 147551 0.69 0.604327
Target:  5'- ---gGCGGCGgguuCCGgGUGCcGGCGCGg -3'
miRNA:   3'- aaagCGCCGUu---GGUgCACGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 146060 0.75 0.316002
Target:  5'- -gUCGCGGC-GCUACGUGgaccagucgaCGGGCGCGa -3'
miRNA:   3'- aaAGCGCCGuUGGUGCAC----------GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 145738 0.74 0.338302
Target:  5'- --aCGCGGCGACCcgggGCGcGCGGGCGgAg -3'
miRNA:   3'- aaaGCGCCGUUGG----UGCaCGUCCGCgU- -5'
21382 3' -58 NC_004812.1 + 143961 0.68 0.655586
Target:  5'- --gCGCGGCGGgcUCAUGUcGguGGCGCu -3'
miRNA:   3'- aaaGCGCCGUU--GGUGCA-CguCCGCGu -5'
21382 3' -58 NC_004812.1 + 143306 0.7 0.543561
Target:  5'- -aUCGCGGUGACCACcagGCu-GCGCAa -3'
miRNA:   3'- aaAGCGCCGUUGGUGca-CGucCGCGU- -5'
21382 3' -58 NC_004812.1 + 142793 0.68 0.680086
Target:  5'- --gCGCGGUccucguggaggagauGACgGCGUGCccgcGGCGCAa -3'
miRNA:   3'- aaaGCGCCG---------------UUGgUGCACGu---CCGCGU- -5'
21382 3' -58 NC_004812.1 + 142488 0.68 0.676015
Target:  5'- --aCGCGGCuGGCgGCGUucacGCAcGGCGCGc -3'
miRNA:   3'- aaaGCGCCG-UUGgUGCA----CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 142256 1.06 0.002505
Target:  5'- cUUUCGCGGCAACCACGUGCAGGCGCAg -3'
miRNA:   3'- -AAAGCGCCGUUGGUGCACGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.