miRNA display CGI


Results 1 - 20 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 103943 0.65 0.946343
Target:  5'- aGCAGGCGGUuauAGAGgGCC---GCCg -3'
miRNA:   3'- aCGUCUGCCAcu-UCUCgUGGgugUGG- -5'
21384 5' -55 NC_004812.1 + 151534 0.65 0.946343
Target:  5'- cGCGGACGGcGAcggcggggccGGGGCcgggggcgcggcGCCCucgcGCGCCc -3'
miRNA:   3'- aCGUCUGCCaCU----------UCUCG------------UGGG----UGUGG- -5'
21384 5' -55 NC_004812.1 + 144852 0.65 0.946343
Target:  5'- cGCGGGgagaGcGUGcGGAGC-CCCACgGCCg -3'
miRNA:   3'- aCGUCUg---C-CACuUCUCGuGGGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 113616 0.65 0.946343
Target:  5'- cGCGGuccUGGaGAAccuGAGCACCCggcuGCGCCc -3'
miRNA:   3'- aCGUCu--GCCaCUU---CUCGUGGG----UGUGG- -5'
21384 5' -55 NC_004812.1 + 3846 0.65 0.946343
Target:  5'- cGCAGGCGcau--GAGCACCaGCGCg -3'
miRNA:   3'- aCGUCUGCcacuuCUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 121744 0.65 0.946343
Target:  5'- gGCGcGCGGcGggGGGCG-CCGgGCCu -3'
miRNA:   3'- aCGUcUGCCaCuuCUCGUgGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 59287 0.65 0.946343
Target:  5'- cGCGGGCGcgc---GGCACCCGCccGCCg -3'
miRNA:   3'- aCGUCUGCcacuucUCGUGGGUG--UGG- -5'
21384 5' -55 NC_004812.1 + 129354 0.65 0.946343
Target:  5'- cGCAGGCGcau--GAGCACCaGCGCg -3'
miRNA:   3'- aCGUCUGCcacuuCUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 144076 0.65 0.946343
Target:  5'- gGCcuGGCGGagcugcugGAGGAGUcCCCGCuGCCg -3'
miRNA:   3'- aCGu-CUGCCa-------CUUCUCGuGGGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 26025 0.65 0.946343
Target:  5'- cGCGGACGGcGAcggcggggccGGGGCcgggggcgcggcGCCCucgcGCGCCc -3'
miRNA:   3'- aCGUCUGCCaCU----------UCUCG------------UGGG----UGUGG- -5'
21384 5' -55 NC_004812.1 + 1331 0.65 0.946343
Target:  5'- cGCGGGCGGUccgcGGGCGgUC-CGCCg -3'
miRNA:   3'- aCGUCUGCCAcuu-CUCGUgGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 12385 0.65 0.946343
Target:  5'- cGCGGcCGGgagggcGAAGAGCcgaACCUcguCGCCg -3'
miRNA:   3'- aCGUCuGCCa-----CUUCUCG---UGGGu--GUGG- -5'
21384 5' -55 NC_004812.1 + 32232 0.65 0.946343
Target:  5'- cGCGGGCGGUccgcGGGCGgUC-CGCCg -3'
miRNA:   3'- aCGUCUGCCAcuu-CUCGUgGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 147064 0.65 0.945902
Target:  5'- --gAGGCGGUGGccgaagcGGGGCcUCCGCAgCCg -3'
miRNA:   3'- acgUCUGCCACU-------UCUCGuGGGUGU-GG- -5'
21384 5' -55 NC_004812.1 + 115420 0.65 0.945902
Target:  5'- cGCGGcgcgccgaccggcGCGGcGccGAGAGCGCCUggcggcGCGCCg -3'
miRNA:   3'- aCGUC-------------UGCCaC--UUCUCGUGGG------UGUGG- -5'
21384 5' -55 NC_004812.1 + 147453 0.65 0.945902
Target:  5'- cGCGGACGGcUGGucgcagaggggauAGAGCAgggcgaCCgugGCGCCg -3'
miRNA:   3'- aCGUCUGCC-ACU-------------UCUCGUg-----GG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 49191 0.65 0.945902
Target:  5'- cGCGGcCGGUGGgccuGGccGCACCCGCcguuucggcggcgGCCc -3'
miRNA:   3'- aCGUCuGCCACU----UCu-CGUGGGUG-------------UGG- -5'
21384 5' -55 NC_004812.1 + 85619 0.65 0.945902
Target:  5'- aGCGGGCcGUcuGGAGgcguuccGGC-CCCACGCCu -3'
miRNA:   3'- aCGUCUGcCA--CUUC-------UCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 3326 0.66 0.941831
Target:  5'- aGgGGAgGGgcccGAGGGGC-CgCCGCGCCc -3'
miRNA:   3'- aCgUCUgCCa---CUUCUCGuG-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 55649 0.66 0.941831
Target:  5'- cGCGGACGuccgcgGcGGcGCGCCC-CGCCa -3'
miRNA:   3'- aCGUCUGCca----CuUCuCGUGGGuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.