miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 138279 0.71 0.539157
Target:  5'- cGCGCCGcgcccugcggGCGgugGUCGCgGCGGGCUCGg -3'
miRNA:   3'- cUGUGGU----------UGCa--CAGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 138045 0.7 0.619827
Target:  5'- cGGCGgCGGCGg--CGgaGCGGGCCCGc -3'
miRNA:   3'- -CUGUgGUUGCacaGCgaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 136778 0.73 0.417372
Target:  5'- cGCGCUGuacGCGUGcgCGCUGguGGCCCu -3'
miRNA:   3'- cUGUGGU---UGCACa-GCGACguCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 136632 0.72 0.513639
Target:  5'- --uGCCGAgGUGUCgaucgccucgacggaGCUGCAGGCCUu -3'
miRNA:   3'- cugUGGUUgCACAG---------------CGACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 135812 0.68 0.701014
Target:  5'- gGGCGCCGACGcgGgcgCGCcGCAGGUgcuCCAg -3'
miRNA:   3'- -CUGUGGUUGCa-Ca--GCGaCGUCCG---GGU- -5'
21385 5' -57.6 NC_004812.1 + 135478 1.09 0.001992
Target:  5'- cGACACCAACGUGUCGCUGCAGGCCCAg -3'
miRNA:   3'- -CUGUGGUUGCACAGCGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 133723 0.75 0.328457
Target:  5'- cGCACCucGGCGUGUCGUUgGCGGGgCCAu -3'
miRNA:   3'- cUGUGG--UUGCACAGCGA-CGUCCgGGU- -5'
21385 5' -57.6 NC_004812.1 + 130422 0.68 0.730747
Target:  5'- cGCGCCGcCGc-UCGCUGC-GGCCCGc -3'
miRNA:   3'- cUGUGGUuGCacAGCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 129879 0.67 0.79673
Target:  5'- cGGCGgCGGCGUG-CGC--CAGGCCCc -3'
miRNA:   3'- -CUGUgGUUGCACaGCGacGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 129406 0.73 0.462354
Target:  5'- gGACGCUGACGccgcGUCGCUGCggcGGGCCg- -3'
miRNA:   3'- -CUGUGGUUGCa---CAGCGACG---UCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 129366 0.69 0.670762
Target:  5'- aGCACCAGCGcGUCGCgcgUGC-GGCgCAg -3'
miRNA:   3'- cUGUGGUUGCaCAGCG---ACGuCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 129226 0.67 0.787677
Target:  5'- cGGCGCCGGCGgagCGCaccuggcGCGGGCCg- -3'
miRNA:   3'- -CUGUGGUUGCacaGCGa------CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 128988 0.67 0.778484
Target:  5'- cGCGCCGucagcGCGgcggGcCGCgggcGCGGGCCCGg -3'
miRNA:   3'- cUGUGGU-----UGCa---CaGCGa---CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 128949 0.67 0.787677
Target:  5'- cGGCGCCAGCc-GcCGCggggGuCGGGCCCGg -3'
miRNA:   3'- -CUGUGGUUGcaCaGCGa---C-GUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 128915 0.77 0.27958
Target:  5'- gGGCGCCGGCGUGUgGCU--GGGCCCc -3'
miRNA:   3'- -CUGUGGUUGCACAgCGAcgUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 128705 0.7 0.630027
Target:  5'- aGGCGgCGGCGcGgCGCaGCGGGCCCGa -3'
miRNA:   3'- -CUGUgGUUGCaCaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 128300 0.7 0.609636
Target:  5'- cGGCGCagggcagguaGACGUGgcggCGCgcgacgGCGGGCCCGu -3'
miRNA:   3'- -CUGUGg---------UUGCACa---GCGa-----CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 127713 0.75 0.359105
Target:  5'- cGGCGagCAGCGUGUCGCcGC-GGCCCGc -3'
miRNA:   3'- -CUGUg-GUUGCACAGCGaCGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 127513 0.67 0.79673
Target:  5'- -cCGCCGGCG-GUCGCUcgGGGCgCCGa -3'
miRNA:   3'- cuGUGGUUGCaCAGCGAcgUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 127292 0.68 0.701014
Target:  5'- cGCGCCGACGggagCGCgUGCaucGGGCCCc -3'
miRNA:   3'- cUGUGGUUGCaca-GCG-ACG---UCCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.