Results 21 - 40 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 138986 | 0.69 | 0.670762 |
Target: 5'- cGGCACCGACGg--CGgaGCgguucgcccGGGCCCGc -3' miRNA: 3'- -CUGUGGUUGCacaGCgaCG---------UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 129366 | 0.69 | 0.670762 |
Target: 5'- aGCACCAGCGcGUCGCgcgUGC-GGCgCAg -3' miRNA: 3'- cUGUGGUUGCaCAGCG---ACGuCCGgGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 138832 | 0.71 | 0.529288 |
Target: 5'- gGACGCCGcuGCGUGUCcCcGCAGGaCCCc -3' miRNA: 3'- -CUGUGGU--UGCACAGcGaCGUCC-GGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 49732 | 0.72 | 0.500104 |
Target: 5'- gGACgGCCGACGgggucgggGUCGCgGCggGGGCCCGg -3' miRNA: 3'- -CUG-UGGUUGCa-------CAGCGaCG--UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 91190 | 0.72 | 0.500104 |
Target: 5'- -uCGCCuGCGUGUUGUuggggUGCAGGUCCGu -3' miRNA: 3'- cuGUGGuUGCACAGCG-----ACGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 70116 | 0.72 | 0.471655 |
Target: 5'- aGGCGCCgGGCGcGUgGCUGC-GGCCCGc -3' miRNA: 3'- -CUGUGG-UUGCaCAgCGACGuCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 7630 | 0.74 | 0.391697 |
Target: 5'- aGACGCgCGGCGgccgggGUCggggcgcgaaGCUGCGGGCCCGc -3' miRNA: 3'- -CUGUG-GUUGCa-----CAG----------CGACGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 127713 | 0.75 | 0.359105 |
Target: 5'- cGGCGagCAGCGUGUCGCcGC-GGCCCGc -3' miRNA: 3'- -CUGUg-GUUGCACAGCGaCGuCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 154003 | 0.75 | 0.354383 |
Target: 5'- cGGCGCCAACGUG-CGCUaccGCgcgcgcacgcgccucGGGCCCGa -3' miRNA: 3'- -CUGUGGUUGCACaGCGA---CG---------------UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 128915 | 0.77 | 0.27958 |
Target: 5'- gGGCGCCGGCGUGUgGCU--GGGCCCc -3' miRNA: 3'- -CUGUGGUUGCACAgCGAcgUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 47131 | 0.7 | 0.589312 |
Target: 5'- uGGCGCUgcugAACaaGUCGCUGCAGGgCCGc -3' miRNA: 3'- -CUGUGG----UUGcaCAGCGACGUCCgGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 82263 | 0.7 | 0.609636 |
Target: 5'- -cCACCAGCGcG-CGCcGCAGGCUCGc -3' miRNA: 3'- cuGUGGUUGCaCaGCGaCGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 83504 | 0.69 | 0.650424 |
Target: 5'- cGACgGCCAgGCG-GUgCGCgaGCAGGCCCGg -3' miRNA: 3'- -CUG-UGGU-UGCaCA-GCGa-CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 155151 | 0.69 | 0.640228 |
Target: 5'- gGACGCCGGCGUcGcCGCcgUGCccGGCCCu -3' miRNA: 3'- -CUGUGGUUGCA-CaGCG--ACGu-CCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 80042 | 0.69 | 0.640228 |
Target: 5'- aGCACaugcGCGggggGUCGCUGCcggccgAGGCCCGc -3' miRNA: 3'- cUGUGgu--UGCa---CAGCGACG------UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 78314 | 0.7 | 0.630027 |
Target: 5'- cGCcCCGGCGUG-CG-UGCGGGCCCc -3' miRNA: 3'- cUGuGGUUGCACaGCgACGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 128705 | 0.7 | 0.630027 |
Target: 5'- aGGCGgCGGCGcGgCGCaGCGGGCCCGa -3' miRNA: 3'- -CUGUgGUUGCaCaGCGaCGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 37510 | 0.7 | 0.619827 |
Target: 5'- cGCGCCuGCGUGUUGUggaGCAGGCggCCGu -3' miRNA: 3'- cUGUGGuUGCACAGCGa--CGUCCG--GGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 39102 | 0.7 | 0.609636 |
Target: 5'- -cCACCGACGgccgcGUCGCggugGuCAGGUCCAc -3' miRNA: 3'- cuGUGGUUGCa----CAGCGa---C-GUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 128300 | 0.7 | 0.609636 |
Target: 5'- cGGCGCagggcagguaGACGUGgcggCGCgcgacgGCGGGCCCGu -3' miRNA: 3'- -CUGUGg---------UUGCACa---GCGa-----CGUCCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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