miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 10555 0.66 0.985146
Target:  5'- cACGcGCGuuCUGCgugccggCGAGCGGUGCcgggggcauuuaugcGCCg -3'
miRNA:   3'- -UGUuCGU--GAUGaa-----GCUCGCCACG---------------UGG- -5'
21386 5' -52.3 NC_004812.1 + 98393 0.66 0.984418
Target:  5'- aGCAAGUACUACgggauGGCGG-GCaacgACCg -3'
miRNA:   3'- -UGUUCGUGAUGaagc-UCGCCaCG----UGG- -5'
21386 5' -52.3 NC_004812.1 + 103474 0.66 0.984418
Target:  5'- cCAGGCGCgccgUCucGCGGUaGUACCg -3'
miRNA:   3'- uGUUCGUGaugaAGcuCGCCA-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 136249 0.66 0.984418
Target:  5'- cACAAGCGCgACUUU--GCGGagGCGCg -3'
miRNA:   3'- -UGUUCGUGaUGAAGcuCGCCa-CGUGg -5'
21386 5' -52.3 NC_004812.1 + 3462 0.66 0.982479
Target:  5'- uCGGGCcCgg---CGGGCGGUcGCGCCg -3'
miRNA:   3'- uGUUCGuGaugaaGCUCGCCA-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 128970 0.66 0.982479
Target:  5'- uCGGGCcCgg---CGGGCGGUcGCGCCg -3'
miRNA:   3'- uGUUCGuGaugaaGCUCGCCA-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 56570 0.66 0.982479
Target:  5'- gGCGcGCACgcGC-UCGAGCGcGgcgaugGCGCCg -3'
miRNA:   3'- -UGUuCGUGa-UGaAGCUCGC-Ca-----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 75950 0.66 0.982479
Target:  5'- cGCGGGUugUACUUguucUGcGCGGccaGCGCCu -3'
miRNA:   3'- -UGUUCGugAUGAA----GCuCGCCa--CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 134654 0.66 0.982479
Target:  5'- cGCGAGCACcACggCGuGGCGuGUG-ACCa -3'
miRNA:   3'- -UGUUCGUGaUGaaGC-UCGC-CACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 145037 0.66 0.982479
Target:  5'- gGCGAGCGCggagGCgg-GGGCGGcgGCggACCu -3'
miRNA:   3'- -UGUUCGUGa---UGaagCUCGCCa-CG--UGG- -5'
21386 5' -52.3 NC_004812.1 + 116972 0.66 0.982479
Target:  5'- uCGGGCugU-CgguggCGuGCGuGUGCACCa -3'
miRNA:   3'- uGUUCGugAuGaa---GCuCGC-CACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 105213 0.66 0.982479
Target:  5'- gGCGAGCGCg----CcGGCGGccgGCGCCu -3'
miRNA:   3'- -UGUUCGUGaugaaGcUCGCCa--CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 115432 0.66 0.982479
Target:  5'- cCGAGCG--ACgUUgGGGCGGcGCGCCg -3'
miRNA:   3'- uGUUCGUgaUG-AAgCUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 36727 0.66 0.980365
Target:  5'- gGCGGGCuCUGCgggCcGGCGGcGCGCUc -3'
miRNA:   3'- -UGUUCGuGAUGaa-GcUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 95494 0.66 0.980365
Target:  5'- cGCGGGCGCcgGCgcgccGCGGgGCGCCg -3'
miRNA:   3'- -UGUUCGUGa-UGaagcuCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 5826 0.66 0.980365
Target:  5'- gGCGGGCuCUGCgggCcGGCGGcGCGCUc -3'
miRNA:   3'- -UGUUCGuGAUGaa-GcUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 129994 0.66 0.980365
Target:  5'- -gAGGCGCUGCUgUCGu-CGGUG-ACCg -3'
miRNA:   3'- ugUUCGUGAUGA-AGCucGCCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 36883 0.66 0.980365
Target:  5'- gGCGAGUAC-GCg--GGGUGGUagGCGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaagCUCGCCA--CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 90251 0.66 0.980365
Target:  5'- -gGGGUACUACcUCGgcaucGGCGGcUGCugCc -3'
miRNA:   3'- ugUUCGUGAUGaAGC-----UCGCC-ACGugG- -5'
21386 5' -52.3 NC_004812.1 + 15885 0.66 0.980365
Target:  5'- uGCGcGC-CUACcUCGAcgagGCGGggggGCACCu -3'
miRNA:   3'- -UGUuCGuGAUGaAGCU----CGCCa---CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.