miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 29697 0.66 0.919967
Target:  5'- gCCGCC--GUCGgggCCGGGccgCGaAGAGCg -3'
miRNA:   3'- -GGCGGagUAGCa--GGUCCa--GC-UCUCGg -5'
21387 3' -56.7 NC_004812.1 + 129309 0.66 0.919967
Target:  5'- cCCGCUUCAcCGagauggcCCGGGcCGuGAGCUu -3'
miRNA:   3'- -GGCGGAGUaGCa------GGUCCaGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 155205 0.66 0.919967
Target:  5'- gCCGCC--GUCGgggCCGGGccgCGaAGAGCg -3'
miRNA:   3'- -GGCGGagUAGCa--GGUCCa--GC-UCUCGg -5'
21387 3' -56.7 NC_004812.1 + 128480 0.66 0.919967
Target:  5'- aCCGUCUCGcCGaUCAGGaggagcagcUCGAGgaAGCCg -3'
miRNA:   3'- -GGCGGAGUaGCaGGUCC---------AGCUC--UCGG- -5'
21387 3' -56.7 NC_004812.1 + 147981 0.66 0.919967
Target:  5'- uCCGUgCUCAUgGcgCCGGG-CGgcGGGGCCg -3'
miRNA:   3'- -GGCG-GAGUAgCa-GGUCCaGC--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 138508 0.66 0.919967
Target:  5'- gCGCCgCGUCGUCCGcGuGUgCGGcGGCCc -3'
miRNA:   3'- gGCGGaGUAGCAGGU-C-CA-GCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 50756 0.66 0.919967
Target:  5'- cCCGCCgucCGaCGUCCccgAGGcCGAGAugaaccccgcGCCg -3'
miRNA:   3'- -GGCGGa--GUaGCAGG---UCCaGCUCU----------CGG- -5'
21387 3' -56.7 NC_004812.1 + 25597 0.66 0.919967
Target:  5'- cCCGCCUCGUCcUUCucGUCGucGGCg -3'
miRNA:   3'- -GGCGGAGUAGcAGGucCAGCucUCGg -5'
21387 3' -56.7 NC_004812.1 + 135444 0.66 0.919967
Target:  5'- gCGCCUCggCGUCCcgcGGcacgcCGAGAcccccGCCg -3'
miRNA:   3'- gGCGGAGuaGCAGGu--CCa----GCUCU-----CGG- -5'
21387 3' -56.7 NC_004812.1 + 141557 0.66 0.914357
Target:  5'- gCCGCCagUCcgCcUCCAGGUCccgguGAGCg -3'
miRNA:   3'- -GGCGG--AGuaGcAGGUCCAGcu---CUCGg -5'
21387 3' -56.7 NC_004812.1 + 38811 0.66 0.914357
Target:  5'- gCGCuCUCGagcUCGUCCAgcgucucgcGGUUGAGGuCCa -3'
miRNA:   3'- gGCG-GAGU---AGCAGGU---------CCAGCUCUcGG- -5'
21387 3' -56.7 NC_004812.1 + 8233 0.66 0.914357
Target:  5'- gCGCC-CggCGgCCGGGcCGGGGGUCc -3'
miRNA:   3'- gGCGGaGuaGCaGGUCCaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 39134 0.66 0.914357
Target:  5'- gCGCC-CggCGgCCGGGcCGGGGGUCc -3'
miRNA:   3'- gGCGGaGuaGCaGGUCCaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 86454 0.66 0.914357
Target:  5'- gCCGCUUCGugcaguguggcUCGcacugcgCCAuGGUCGuugacGGAGCCg -3'
miRNA:   3'- -GGCGGAGU-----------AGCa------GGU-CCAGC-----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 99220 0.66 0.914357
Target:  5'- gUGCCgggcgaacgCGUCGgCgGGGgCGGGGGCCg -3'
miRNA:   3'- gGCGGa--------GUAGCaGgUCCaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 10353 0.66 0.914357
Target:  5'- gCCGUCUCGUCGUCgcucuccgugUAGuacgccUCGGGGGUCu -3'
miRNA:   3'- -GGCGGAGUAGCAG----------GUCc-----AGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 60583 0.66 0.914357
Target:  5'- gCGCaC-CcgCGUCCAGGUCccguagcggaGGGGGCg -3'
miRNA:   3'- gGCG-GaGuaGCAGGUCCAG----------CUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 14070 0.66 0.910882
Target:  5'- cCCGCCUCGUCGaUCacgacgauguugcugCGGGUgaacgcgGGGAGCg -3'
miRNA:   3'- -GGCGGAGUAGC-AG---------------GUCCAg------CUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 46410 0.66 0.910882
Target:  5'- gCGUCUCGUgcagcgCGUCCAGGuacgccgccuccucgUCGAcacccccgcGGGCCa -3'
miRNA:   3'- gGCGGAGUA------GCAGGUCC---------------AGCU---------CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 22762 0.66 0.908521
Target:  5'- -gGaCCUgGUgCGUCCAGGU-GGGGGCg -3'
miRNA:   3'- ggC-GGAgUA-GCAGGUCCAgCUCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.