miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 139792 0.68 0.845468
Target:  5'- gCCGCCgUC-UCcUCCucggcggGGGUCGAGguGGCCa -3'
miRNA:   3'- -GGCGG-AGuAGcAGG-------UCCAGCUC--UCGG- -5'
21387 3' -56.7 NC_004812.1 + 139138 0.71 0.642786
Target:  5'- aCCGCggCAUcCG-CCGcGGUCGAGAGCg -3'
miRNA:   3'- -GGCGgaGUA-GCaGGU-CCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 138508 0.66 0.919967
Target:  5'- gCGCCgCGUCGUCCGcGuGUgCGGcGGCCc -3'
miRNA:   3'- gGCGGaGUAGCAGGU-C-CA-GCUcUCGG- -5'
21387 3' -56.7 NC_004812.1 + 138439 0.69 0.769142
Target:  5'- gCGCCcCAUCGcCCucagguGGUaCGGGGGCUg -3'
miRNA:   3'- gGCGGaGUAGCaGGu-----CCA-GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 137968 0.71 0.682637
Target:  5'- gCC-CCUCGUCGgggCgGGGUCGGGGGg- -3'
miRNA:   3'- -GGcGGAGUAGCa--GgUCCAGCUCUCgg -5'
21387 3' -56.7 NC_004812.1 + 136433 0.74 0.524223
Target:  5'- gCGCC-CGcUCGcCCGGGUCGGG-GCCc -3'
miRNA:   3'- gGCGGaGU-AGCaGGUCCAGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 135444 0.66 0.919967
Target:  5'- gCGCCUCggCGUCCcgcGGcacgcCGAGAcccccGCCg -3'
miRNA:   3'- gGCGGAGuaGCAGGu--CCa----GCUCU-----CGG- -5'
21387 3' -56.7 NC_004812.1 + 135212 0.7 0.750514
Target:  5'- uCCGucuCCUCGUCGUCUGuGUUG-GGGCCg -3'
miRNA:   3'- -GGC---GGAGUAGCAGGUcCAGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 134329 1.14 0.001548
Target:  5'- aCCGCCUCAUCGUCCAGGUCGAGAGCCu -3'
miRNA:   3'- -GGCGGAGUAGCAGGUCCAGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 133878 0.68 0.830233
Target:  5'- gCCGCgcgcgagacgggCUCGUCGcCCucGGUCGcggcGGGGCCu -3'
miRNA:   3'- -GGCG------------GAGUAGCaGGu-CCAGC----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 133678 0.7 0.750514
Target:  5'- aCGagaCUCugggCGUCCAGGcgCGGGGGCg -3'
miRNA:   3'- gGCg--GAGua--GCAGGUCCa-GCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 131394 0.67 0.882949
Target:  5'- gCCgGCCUCAUauacccCGUCCGccGG-CGggcGGAGCCg -3'
miRNA:   3'- -GG-CGGAGUA------GCAGGU--CCaGC---UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 130837 0.68 0.821961
Target:  5'- uCCGCCggggCGcCGcCCGGGgucggCGGGGGCg -3'
miRNA:   3'- -GGCGGa---GUaGCaGGUCCa----GCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 130520 0.69 0.787303
Target:  5'- gCCGCCcCA-CGUgCuGGcggagacguUCGAGAGCCa -3'
miRNA:   3'- -GGCGGaGUaGCAgGuCC---------AGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 130336 0.67 0.88967
Target:  5'- -gGCCUCGUCGgcgUCCAGGggcacGGCCc -3'
miRNA:   3'- ggCGGAGUAGC---AGGUCCagcucUCGG- -5'
21387 3' -56.7 NC_004812.1 + 130185 0.67 0.882949
Target:  5'- gCGCCUCGUCcaccUCCGGcG-CGccccAGAGCCc -3'
miRNA:   3'- gGCGGAGUAGc---AGGUC-CaGC----UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 130119 0.7 0.712135
Target:  5'- gCGCCgCGUCGcCCAGcUCGGGcGCCc -3'
miRNA:   3'- gGCGGaGUAGCaGGUCcAGCUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 129309 0.66 0.919967
Target:  5'- cCCGCUUCAcCGagauggcCCGGGcCGuGAGCUu -3'
miRNA:   3'- -GGCGGAGUaGCa------GGUCCaGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 128583 0.71 0.682637
Target:  5'- gCCGCCgcgcgCGUCgGUCCAGG-CGGGcggGGCg -3'
miRNA:   3'- -GGCGGa----GUAG-CAGGUCCaGCUC---UCGg -5'
21387 3' -56.7 NC_004812.1 + 128480 0.66 0.919967
Target:  5'- aCCGUCUCGcCGaUCAGGaggagcagcUCGAGgaAGCCg -3'
miRNA:   3'- -GGCGGAGUaGCaGGUCC---------AGCUC--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.