miRNA display CGI


Results 21 - 40 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21387 3' -56.7 NC_004812.1 + 71234 0.7 0.702356
Target:  5'- gCGCCcgaagcacagcUCggCGUCCAGGUCGAuGAacgcgcacGCCg -3'
miRNA:   3'- gGCGG-----------AGuaGCAGGUCCAGCU-CU--------CGG- -5'
21387 3' -56.7 NC_004812.1 + 60765 0.71 0.65278
Target:  5'- gCGCCUCG--GUCC-GGUUGGGGGCg -3'
miRNA:   3'- gGCGGAGUagCAGGuCCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 60363 0.73 0.563148
Target:  5'- gCGCCUCGgaCGUCaGGGUCGAcguGGCCg -3'
miRNA:   3'- gGCGGAGUa-GCAGgUCCAGCUc--UCGG- -5'
21387 3' -56.7 NC_004812.1 + 61305 0.76 0.423492
Target:  5'- gCgGCCUCcgcgGUCGUUCAacgcGGUgGAGAGCCa -3'
miRNA:   3'- -GgCGGAG----UAGCAGGU----CCAgCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 39279 0.69 0.778285
Target:  5'- gCCGCCggggccCGggGUCCGGGggcgcggCGGGGGCUc -3'
miRNA:   3'- -GGCGGa-----GUagCAGGUCCa------GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 68086 0.7 0.725714
Target:  5'- cCCGgaaCUCcUCGgaggCCAGGUCGAGccccaucuugaggcaGGCCg -3'
miRNA:   3'- -GGCg--GAGuAGCa---GGUCCAGCUC---------------UCGG- -5'
21387 3' -56.7 NC_004812.1 + 13041 0.71 0.65278
Target:  5'- uCCGUuucagCUCGUCGcCCAGGcgCGccAGGGCCg -3'
miRNA:   3'- -GGCG-----GAGUAGCaGGUCCa-GC--UCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 91564 0.77 0.357949
Target:  5'- aCCGCgUCGUCGUaaaacagCAGGUCGAccaGGGCCc -3'
miRNA:   3'- -GGCGgAGUAGCAg------GUCCAGCU---CUCGG- -5'
21387 3' -56.7 NC_004812.1 + 149766 0.7 0.721849
Target:  5'- gCCGCCUCGcCGaCCg---CGAGGGCCg -3'
miRNA:   3'- -GGCGGAGUaGCaGGuccaGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 14310 0.78 0.325775
Target:  5'- cCCGCCgCGccggcccggggcccUCGUCCAGGagcucCGGGAGCCg -3'
miRNA:   3'- -GGCGGaGU--------------AGCAGGUCCa----GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 25898 0.71 0.65278
Target:  5'- uCgGCCUCGgaGUCgGGGUCG-GAGUCg -3'
miRNA:   3'- -GgCGGAGUagCAGgUCCAGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 106605 0.7 0.712135
Target:  5'- gCCGCCgccacCGUC-UCCGGGUCcAGcGCCa -3'
miRNA:   3'- -GGCGGa----GUAGcAGGUCCAGcUCuCGG- -5'
21387 3' -56.7 NC_004812.1 + 106741 0.72 0.612785
Target:  5'- -gGCC-CAUCGUCCGGGcgCGGGGGg- -3'
miRNA:   3'- ggCGGaGUAGCAGGUCCa-GCUCUCgg -5'
21387 3' -56.7 NC_004812.1 + 155136 0.73 0.573008
Target:  5'- uCCGCggCggCGgggggCCGGGUCGAGGGCg -3'
miRNA:   3'- -GGCGgaGuaGCa----GGUCCAGCUCUCGg -5'
21387 3' -56.7 NC_004812.1 + 92891 0.74 0.524223
Target:  5'- aCCGCCUCGgcgacggCGUUCAGcuuguagcUCGAGAGCUu -3'
miRNA:   3'- -GGCGGAGUa------GCAGGUCc-------AGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 28242 0.75 0.432179
Target:  5'- gCCGCCUCGUCGUCguGGaCGccGuGCCc -3'
miRNA:   3'- -GGCGGAGUAGCAGguCCaGCu-CuCGG- -5'
21387 3' -56.7 NC_004812.1 + 146767 0.68 0.804931
Target:  5'- gUCGgCgugagCGUCGUCgAGGcccaaCGAGGGCCg -3'
miRNA:   3'- -GGCgGa----GUAGCAGgUCCa----GCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 130520 0.69 0.787303
Target:  5'- gCCGCCcCA-CGUgCuGGcggagacguUCGAGAGCCa -3'
miRNA:   3'- -GGCGGaGUaGCAgGuCC---------AGCUCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 148538 0.69 0.759882
Target:  5'- gCCGCCgggCG-CGgCgGGGUCGcGGGCCg -3'
miRNA:   3'- -GGCGGa--GUaGCaGgUCCAGCuCUCGG- -5'
21387 3' -56.7 NC_004812.1 + 63127 0.7 0.731489
Target:  5'- uCCGcCCUCcUCGgcccCCGGGggaggGGGAGCCg -3'
miRNA:   3'- -GGC-GGAGuAGCa---GGUCCag---CUCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.