miRNA display CGI


Results 21 - 40 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21388 3' -63.7 NC_004812.1 + 145922 0.7 0.346881
Target:  5'- cGCCCCCGUGUACCU-GGUgaCGUgGUUGg -3'
miRNA:   3'- -CGGGGGCGCGUGGAgCCG--GCA-CAGCa -5'
21388 3' -63.7 NC_004812.1 + 145318 0.7 0.346881
Target:  5'- cGCCCCgcgcgGCGCGCCUCguGGgCGUGcUCGg -3'
miRNA:   3'- -CGGGGg----CGCGUGGAG--CCgGCAC-AGCa -5'
21388 3' -63.7 NC_004812.1 + 143795 0.7 0.360924
Target:  5'- uUCCCCGCccacuccccaucgGC-CCgaCGGCCGUGUCGa -3'
miRNA:   3'- cGGGGGCG-------------CGuGGa-GCCGGCACAGCa -5'
21388 3' -63.7 NC_004812.1 + 143327 0.66 0.588102
Target:  5'- cGCCCcgCCGCGCcgagGCCUCcGCCGccccgacGUCGg -3'
miRNA:   3'- -CGGG--GGCGCG----UGGAGcCGGCa------CAGCa -5'
21388 3' -63.7 NC_004812.1 + 142383 0.66 0.616911
Target:  5'- -aCCCgGCGCGCCgUGGCCGccgGgggCGg -3'
miRNA:   3'- cgGGGgCGCGUGGaGCCGGCa--Ca--GCa -5'
21388 3' -63.7 NC_004812.1 + 142246 0.68 0.485698
Target:  5'- cGCCgCCGCGC-CCgcgCGGCCGgcaagcaCGUg -3'
miRNA:   3'- -CGGgGGCGCGuGGa--GCCGGCaca----GCA- -5'
21388 3' -63.7 NC_004812.1 + 142149 0.72 0.26736
Target:  5'- cGCCCCCGCGC-CCUCcGGCCa------ -3'
miRNA:   3'- -CGGGGGCGCGuGGAG-CCGGcacagca -5'
21388 3' -63.7 NC_004812.1 + 140877 0.7 0.392553
Target:  5'- gGCCCCCGCgGCcCCUCGaUCGccGUCGUu -3'
miRNA:   3'- -CGGGGGCG-CGuGGAGCcGGCa-CAGCA- -5'
21388 3' -63.7 NC_004812.1 + 140495 0.69 0.43348
Target:  5'- gGCCCCCGC-CACCaacucgaCGGUCGUGccCGa -3'
miRNA:   3'- -CGGGGGCGcGUGGa------GCCGGCACa-GCa -5'
21388 3' -63.7 NC_004812.1 + 140109 0.78 0.111336
Target:  5'- cGCCCCCGCGCcCCcCGGCCgGUGgCGg -3'
miRNA:   3'- -CGGGGGCGCGuGGaGCCGG-CACaGCa -5'
21388 3' -63.7 NC_004812.1 + 140031 0.68 0.494694
Target:  5'- uGCCgCCCGCGgGCC-CGGUCGccGUCc- -3'
miRNA:   3'- -CGG-GGGCGCgUGGaGCCGGCa-CAGca -5'
21388 3' -63.7 NC_004812.1 + 139905 0.72 0.298568
Target:  5'- gGCCCCgcggucgcuCGCGCACCcgcCGGUCGggGUCGg -3'
miRNA:   3'- -CGGGG---------GCGCGUGGa--GCCGGCa-CAGCa -5'
21388 3' -63.7 NC_004812.1 + 139767 0.66 0.588102
Target:  5'- cGCgaCCGCGCGCCUaagggcggCGGCCGccGUCu- -3'
miRNA:   3'- -CGggGGCGCGUGGA--------GCCGGCa-CAGca -5'
21388 3' -63.7 NC_004812.1 + 138753 0.7 0.346881
Target:  5'- cGCCCCCGCggugccucugugGCGCUcgauccCGGCCGccuggGUCGUg -3'
miRNA:   3'- -CGGGGGCG------------CGUGGa-----GCCGGCa----CAGCA- -5'
21388 3' -63.7 NC_004812.1 + 138636 0.66 0.588102
Target:  5'- gGCUCCaCGUcggGCGCCUgaCGGCCGccGUCGc -3'
miRNA:   3'- -CGGGG-GCG---CGUGGA--GCCGGCa-CAGCa -5'
21388 3' -63.7 NC_004812.1 + 138553 0.7 0.384674
Target:  5'- cGCCCUCGUGaaCGCCUCGcugcugguGCCG-GUCGUc -3'
miRNA:   3'- -CGGGGGCGC--GUGGAGC--------CGGCaCAGCA- -5'
21388 3' -63.7 NC_004812.1 + 138253 0.69 0.416809
Target:  5'- gGgCCCgGCGcCGCCggUGGCCGaUGUCGa -3'
miRNA:   3'- -CgGGGgCGC-GUGGa-GCCGGC-ACAGCa -5'
21388 3' -63.7 NC_004812.1 + 138249 0.69 0.441959
Target:  5'- gGCCCgCGUaCGCCgcggCGGCCGcgGUCGc -3'
miRNA:   3'- -CGGGgGCGcGUGGa---GCCGGCa-CAGCa -5'
21388 3' -63.7 NC_004812.1 + 137590 0.66 0.607289
Target:  5'- uGCCgCCCGCGCugCgccggcccgCGGCCGcgGgccucCGg -3'
miRNA:   3'- -CGG-GGGCGCGugGa--------GCCGGCa-Ca----GCa -5'
21388 3' -63.7 NC_004812.1 + 137541 0.68 0.459194
Target:  5'- gGCCCggCGCGgGCCUgGGCCGcgGUCu- -3'
miRNA:   3'- -CGGGg-GCGCgUGGAgCCGGCa-CAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.