miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 51871 0.66 0.951945
Target:  5'- gGCGGCGGGGCGaauuUCgcccCAGCGACu -3'
miRNA:   3'- -CGUCGUCCUGCcacuAGac--GUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 37268 0.66 0.951945
Target:  5'- cCAGCuGGGCGG-GG--UGCAGCGGg -3'
miRNA:   3'- cGUCGuCCUGCCaCUagACGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 64252 0.66 0.951945
Target:  5'- gGCGGCGGGGCGGagaggcGAUgUGUguugGGgGGCg -3'
miRNA:   3'- -CGUCGUCCUGCCa-----CUAgACG----UCgUUG- -5'
21389 3' -54.2 NC_004812.1 + 73872 0.66 0.951945
Target:  5'- cGCGGuCAGGGCGGcGuacagcUCgGCGGCcGCg -3'
miRNA:   3'- -CGUC-GUCCUGCCaCu-----AGaCGUCGuUG- -5'
21389 3' -54.2 NC_004812.1 + 105202 0.66 0.951945
Target:  5'- gGCGGguGGugGGcGAgcgCgccgGCGGcCGGCg -3'
miRNA:   3'- -CGUCguCCugCCaCUa--Ga---CGUC-GUUG- -5'
21389 3' -54.2 NC_004812.1 + 71272 0.66 0.947673
Target:  5'- cGCAcGcCGGGACGGUGAUC-GC--CGACc -3'
miRNA:   3'- -CGU-C-GUCCUGCCACUAGaCGucGUUG- -5'
21389 3' -54.2 NC_004812.1 + 134373 0.66 0.947673
Target:  5'- aGCGGUGGGAacugGAUCUGCcguacauGCGGCg -3'
miRNA:   3'- -CGUCGUCCUgccaCUAGACGu------CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 72237 0.66 0.947673
Target:  5'- uGCGGCGGGGCGuccGGUCgGCGGgcGCg -3'
miRNA:   3'- -CGUCGUCCUGCca-CUAGaCGUCguUG- -5'
21389 3' -54.2 NC_004812.1 + 45323 0.66 0.947673
Target:  5'- -gAGCAGGGCGGUcuuGUUgacguaCAGCAGCu -3'
miRNA:   3'- cgUCGUCCUGCCAc--UAGac----GUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 93534 0.66 0.947673
Target:  5'- -aGGCGGGGCGcG-GG--UGCGGCGGCg -3'
miRNA:   3'- cgUCGUCCUGC-CaCUagACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 3670 0.66 0.947673
Target:  5'- cCAGCAGGGggcgcaggcucUGGUucuggaagagcaGGUCgGCGGCGGCg -3'
miRNA:   3'- cGUCGUCCU-----------GCCA------------CUAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 129178 0.66 0.947673
Target:  5'- cCAGCAGGGggcgcaggcucUGGUucuggaagagcaGGUCgGCGGCGGCg -3'
miRNA:   3'- cGUCGUCCU-----------GCCA------------CUAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 44937 0.66 0.944993
Target:  5'- -gAGCAGG-CGcGUGAUCUucguguacggauaucGgAGCAGCa -3'
miRNA:   3'- cgUCGUCCuGC-CACUAGA---------------CgUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 4307 0.66 0.943157
Target:  5'- cGCcGCAGGcUGGUGAugaggaagcccuUCUGCgcgcggucguAGCGGCg -3'
miRNA:   3'- -CGuCGUCCuGCCACU------------AGACG----------UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 106013 0.66 0.943157
Target:  5'- uGCAGCGGGcCGGcgauccUGAUCgccgccaacgGC-GCGACg -3'
miRNA:   3'- -CGUCGUCCuGCC------ACUAGa---------CGuCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 35850 0.66 0.943157
Target:  5'- cGCAGCAGcGCGG-GGUCgcugGC-GCAGg -3'
miRNA:   3'- -CGUCGUCcUGCCaCUAGa---CGuCGUUg -5'
21389 3' -54.2 NC_004812.1 + 26681 0.66 0.943157
Target:  5'- cGCuGgAGGGCGGggcugCguagGCGGCGACg -3'
miRNA:   3'- -CGuCgUCCUGCCacua-Ga---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 129815 0.66 0.943157
Target:  5'- cGCcGCAGGcUGGUGAugaggaagcccuUCUGCgcgcggucguAGCGGCg -3'
miRNA:   3'- -CGuCGUCCuGCCACU------------AGACG----------UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 135739 0.66 0.943157
Target:  5'- cCGGCGGGcgacaucgaGGUGGUCgcccUGCAGcCGACa -3'
miRNA:   3'- cGUCGUCCug-------CCACUAG----ACGUC-GUUG- -5'
21389 3' -54.2 NC_004812.1 + 127009 0.66 0.943157
Target:  5'- -gGGUAGGGCGGgggGGgg-GgAGCAACg -3'
miRNA:   3'- cgUCGUCCUGCCa--CUagaCgUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.