miRNA display CGI

Results 1 - 20 of 975 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21390	3'	-65.8	NC_004812.1	+	15371	0.65	0.531369
	Target:  5'- -aGCGACcacgcccuccccagGGACcUGGCgaccguGGCCGGGGCc -3' miRNA:   3'- acCGCUG--------------CCUGuGCCG------CCGGCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	35222	0.65	0.531369
	Target:  5'- aUGGaGACGGGCGacauCGG-GGCCuacguggugcucguGGGGCGc -3' miRNA:   3'- -ACCgCUGCCUGU----GCCgCCGG--------------CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	4321	0.65	0.531369
	Target:  5'- aUGGaGACGGGCGacauCGG-GGCCuacguggugcucguGGGGCGc -3' miRNA:   3'- -ACCgCUGCCUGU----GCCgCCGG--------------CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	19536	0.66	0.528621
	Target:  5'- cGGCGucaGGGCGCGGUggaucgcgaagcccaGGCCGGccaccaccccGGCc -3' miRNA:   3'- aCCGCug-CCUGUGCCG---------------CCGGCC----------CCGc -5'
21390	3'	-65.8	NC_004812.1	+	57954	0.66	0.528621
	Target:  5'- cGGCGuGCGGuuucccaggcucuuCACGGCGGCCacgaacacGGCGc -3' miRNA:   3'- aCCGC-UGCCu-------------GUGCCGCCGGcc------CCGC- -5'
21390	3'	-65.8	NC_004812.1	+	54643	0.66	0.525878
	Target:  5'- gGGCGGCGGGCguccgcggccccugACGcccgccgcccgcgccGCGcGuCCGGGGCc -3' miRNA:   3'- aCCGCUGCCUG--------------UGC---------------CGC-C-GGCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	143937	0.66	0.524965
	Target:  5'- -uGCGugGGAgGUGGgGG-CGGGGUGg -3' miRNA:   3'- acCGCugCCUgUGCCgCCgGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	125276	0.66	0.524965
	Target:  5'- -cGCGGCGGGCGCGcGCGagagcGCCGcGcGCGg -3' miRNA:   3'- acCGCUGCCUGUGC-CGC-----CGGC-CcCGC- -5'
21390	3'	-65.8	NC_004812.1	+	56247	0.66	0.524965
	Target:  5'- cGGCGGCGGGCGCcggaaccGUGGCCcc-GCGg -3' miRNA:   3'- aCCGCUGCCUGUGc------CGCCGGcccCGC- -5'
21390	3'	-65.8	NC_004812.1	+	156177	0.66	0.524965
	Target:  5'- -cGCGGCGGGCGCGcGCGagagcGCCGcGcGCGg -3' miRNA:   3'- acCGCUGCCUGUGC-CGC-----CGGC-CcCGC- -5'
21390	3'	-65.8	NC_004812.1	+	51284	0.66	0.524965
	Target:  5'- cUGGCGcacauGCGcGCGCgGGCGGCCccguacGGGCa -3' miRNA:   3'- -ACCGC-----UGCcUGUG-CCGCCGGc-----CCCGc -5'
21390	3'	-65.8	NC_004812.1	+	64105	0.66	0.524965
	Target:  5'- aGGCGGgaGACGCcGCGGCagaCGGGGgGg -3' miRNA:   3'- aCCGCUgcCUGUGcCGCCG---GCCCCgC- -5'
21390	3'	-65.8	NC_004812.1	+	105400	0.66	0.524965
	Target:  5'- cUGGCGcCGGuGC-CGGCGcucGgCGGGGCc -3' miRNA:   3'- -ACCGCuGCC-UGuGCCGC---CgGCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	121948	0.66	0.524965
	Target:  5'- gGGgGACGcgcuggcccuGGCGcCGGUGGCCcGGGUGu -3' miRNA:   3'- aCCgCUGC----------CUGU-GCCGCCGGcCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	77547	0.66	0.524965
	Target:  5'- gGGCGACGaGcaaACGCGucCGGCCGcuGGGCc -3' miRNA:   3'- aCCGCUGC-C---UGUGCc-GCCGGC--CCCGc -5'
21390	3'	-65.8	NC_004812.1	+	45284	0.66	0.524965
	Target:  5'- nGGCGccgccGCGGGCAgacUGGCguuggcgggcaGGCCGagcaGGGCGg -3' miRNA:   3'- aCCGC-----UGCCUGU---GCCG-----------CCGGC----CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	91696	0.66	0.524965
	Target:  5'- uUGGCGcCGaACACGGCGGCCucuGuGCa -3' miRNA:   3'- -ACCGCuGCcUGUGCCGCCGGcc-C-CGc -5'
21390	3'	-65.8	NC_004812.1	+	128670	0.66	0.524965
	Target:  5'- cGGUc-CGGugGcCGGCGGUcuuccgggaggCGGGGCGc -3' miRNA:   3'- aCCGcuGCCugU-GCCGCCG-----------GCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	20600	0.66	0.524965
	Target:  5'- gUGGCGA-GGACGCGcgccugcgacuGCGucuCgGGGGCGg -3' miRNA:   3'- -ACCGCUgCCUGUGC-----------CGCc--GgCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	108049	0.66	0.524052
	Target:  5'- cGGCGcuGCGGGCGgugagggggaaguCGGCGGC-GGuGCGg -3' miRNA:   3'- aCCGC--UGCCUGU-------------GCCGCCGgCCcCGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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