miRNA display CGI


Results 21 - 40 of 975 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 3' -65.8 NC_004812.1 + 155292 0.72 0.212644
Target:  5'- gGGCG--GGGCGCGGCGGggcCCGGGGg- -3'
miRNA:   3'- aCCGCugCCUGUGCCGCC---GGCCCCgc -5'
21390 3' -65.8 NC_004812.1 + 155254 0.69 0.358664
Target:  5'- gGGCcgagGGgGGGCGCGGCGGacgccaaaCCGGGGa- -3'
miRNA:   3'- aCCG----CUgCCUGUGCCGCC--------GGCCCCgc -5'
21390 3' -65.8 NC_004812.1 + 155211 0.77 0.109569
Target:  5'- aUGGCGGCGaGAgGgGGCgcGGCgCGGGGCGg -3'
miRNA:   3'- -ACCGCUGC-CUgUgCCG--CCG-GCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 155143 0.72 0.23233
Target:  5'- cGGCGGgGGGCcgggucgAgGGCGGUCgugGGGGCGg -3'
miRNA:   3'- aCCGCUgCCUG-------UgCCGCCGG---CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 155089 0.79 0.073911
Target:  5'- cGGCGGCGGcaugcccucGCGCGGCGGCgCGGGcCGg -3'
miRNA:   3'- aCCGCUGCC---------UGUGCCGCCG-GCCCcGC- -5'
21390 3' -65.8 NC_004812.1 + 155015 0.67 0.443176
Target:  5'- gGGCGccCGGAgGCGGgGaGCCGugcgggggggacccGGGCGg -3'
miRNA:   3'- aCCGCu-GCCUgUGCCgC-CGGC--------------CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 154941 0.66 0.497872
Target:  5'- gGGCGGgcCGcGGCGCcGCGGCCaacggGGGaGCGg -3'
miRNA:   3'- aCCGCU--GC-CUGUGcCGCCGG-----CCC-CGC- -5'
21390 3' -65.8 NC_004812.1 + 154940 0.68 0.412673
Target:  5'- gGGaGGCGGACGCGGgGGg-GGGGgGa -3'
miRNA:   3'- aCCgCUGCCUGUGCCgCCggCCCCgC- -5'
21390 3' -65.8 NC_004812.1 + 154879 0.69 0.337081
Target:  5'- gGGCcGCGGaggcGCGCGG-GGCCG-GGCGg -3'
miRNA:   3'- aCCGcUGCC----UGUGCCgCCGGCcCCGC- -5'
21390 3' -65.8 NC_004812.1 + 154844 0.71 0.272088
Target:  5'- cGGCG-CgGGGCGCGGCuGCgagGGGGCGc -3'
miRNA:   3'- aCCGCuG-CCUGUGCCGcCGg--CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 154798 0.68 0.412673
Target:  5'- aGGagaGGCGaGGCGC-GCaGCCGGGGCc -3'
miRNA:   3'- aCCg--CUGC-CUGUGcCGcCGGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 154741 0.77 0.109569
Target:  5'- gGGCGGgGGuCGCGGaggagcgGGCCGGGGCu -3'
miRNA:   3'- aCCGCUgCCuGUGCCg------CCGGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 154706 0.66 0.515868
Target:  5'- gUGGCGuGCGGuGCACGuGUGGUuuauUGGGGgGc -3'
miRNA:   3'- -ACCGC-UGCC-UGUGC-CGCCG----GCCCCgC- -5'
21390 3' -65.8 NC_004812.1 + 154531 0.72 0.238153
Target:  5'- cUGGaGGCaGGACGCGGCGGCggucCGGacGGCGg -3'
miRNA:   3'- -ACCgCUG-CCUGUGCCGCCG----GCC--CCGC- -5'
21390 3' -65.8 NC_004812.1 + 154397 0.77 0.099374
Target:  5'- cGGCGGCGGGC-CG--GGCCGGGGCu -3'
miRNA:   3'- aCCGCUGCCUGuGCcgCCGGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 154028 0.68 0.404653
Target:  5'- cGGCGGCGG---CGGC-GUCGGaGGCGg -3'
miRNA:   3'- aCCGCUGCCuguGCCGcCGGCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 153687 0.69 0.330099
Target:  5'- gGGUGACgaGGACGgGGCGGgcuccCCcGGGCGg -3'
miRNA:   3'- aCCGCUG--CCUGUgCCGCC-----GGcCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 153627 0.72 0.227655
Target:  5'- cGGUGACGGGCcggcccauGCgGGCGGgCGGGGa- -3'
miRNA:   3'- aCCGCUGCCUG--------UG-CCGCCgGCCCCgc -5'
21390 3' -65.8 NC_004812.1 + 153449 0.75 0.136186
Target:  5'- gGGCGGgGGGCGCGGgGG--GGGGCGg -3'
miRNA:   3'- aCCGCUgCCUGUGCCgCCggCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 153341 0.72 0.222554
Target:  5'- gGGCGGCGucuccuCG-GGCGGCgGGGGCGc -3'
miRNA:   3'- aCCGCUGCcu----GUgCCGCCGgCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.