miRNA display CGI


Results 21 - 40 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 141431 0.69 0.839315
Target:  5'- aGGC-CCGGAGGGCggCGCGccacgUGUCGu -3'
miRNA:   3'- -CCGcGGCUUCUCGuaGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 139958 0.66 0.955111
Target:  5'- gGGgGCCgGGAGcgcgcGGCGUgGCGgaCGUCGg -3'
miRNA:   3'- -CCgCGG-CUUC-----UCGUAgCGCaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 139323 0.7 0.822583
Target:  5'- cGGCG-CGGAGAGCGaCGCGggCGa-- -3'
miRNA:   3'- -CCGCgGCUUCUCGUaGCGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 138893 0.66 0.962422
Target:  5'- cGGCGCCGcAGAGCcugcugGUCG-GUcUGUCc -3'
miRNA:   3'- -CCGCGGCuUCUCG------UAGCgCAaGCAGu -5'
21390 5' -54.5 NC_004812.1 + 136476 0.7 0.831039
Target:  5'- gGGCGCCau-GGGCGaCGCGggccUCGUCu -3'
miRNA:   3'- -CCGCGGcuuCUCGUaGCGCa---AGCAGu -5'
21390 5' -54.5 NC_004812.1 + 134768 0.67 0.937737
Target:  5'- cGGaCGCCGAGGGcGCGacgcccUCGgGUUCGg-- -3'
miRNA:   3'- -CC-GCGGCUUCU-CGU------AGCgCAAGCagu -5'
21390 5' -54.5 NC_004812.1 + 134092 0.66 0.955111
Target:  5'- gGGCGCCGA----CGUCGCGgugCGUg- -3'
miRNA:   3'- -CCGCGGCUucucGUAGCGCaa-GCAgu -5'
21390 5' -54.5 NC_004812.1 + 133274 1.11 0.003564
Target:  5'- gGGCGCCGAAGAGCAUCGCGUUCGUCAu -3'
miRNA:   3'- -CCGCGGCUUCUCGUAGCGCAAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 131067 0.71 0.787104
Target:  5'- aGGCGCCcgcGGAGAGCGUgcaCGCGUgCGg-- -3'
miRNA:   3'- -CCGCGG---CUUCUCGUA---GCGCAaGCagu -5'
21390 5' -54.5 NC_004812.1 + 130844 0.68 0.910675
Target:  5'- gGGCGCCGcccGGGgucGGCGggggCGCGgcggCGUCGa -3'
miRNA:   3'- -CCGCGGC---UUC---UCGUa---GCGCaa--GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 130452 0.71 0.758998
Target:  5'- cGGCGCUGGAGGGCGgccgGCGggCGg-- -3'
miRNA:   3'- -CCGCGGCUUCUCGUag--CGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 130081 0.7 0.813953
Target:  5'- gGGCG-CGAAGAGCAggCGCGUgaugagggCGUa- -3'
miRNA:   3'- -CCGCgGCUUCUCGUa-GCGCAa-------GCAgu -5'
21390 5' -54.5 NC_004812.1 + 129559 0.68 0.877725
Target:  5'- cGGCgGCCGc--GGCGUCGuCGUcgUCGUCGu -3'
miRNA:   3'- -CCG-CGGCuucUCGUAGC-GCA--AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 129226 0.67 0.937737
Target:  5'- cGGCGCCGGcGGAGCGcaccuggCGCGggccgcgCGcCAg -3'
miRNA:   3'- -CCGCGGCU-UCUCGUa------GCGCaa-----GCaGU- -5'
21390 5' -54.5 NC_004812.1 + 129138 0.69 0.839314
Target:  5'- cGCGCCGgcGGGCG-CGCGgcgccgcccgCGUCu -3'
miRNA:   3'- cCGCGGCuuCUCGUaGCGCaa--------GCAGu -5'
21390 5' -54.5 NC_004812.1 + 128972 0.68 0.877725
Target:  5'- gGGC-CCGgcGGGCgGUCGCGc-CGUCAg -3'
miRNA:   3'- -CCGcGGCuuCUCG-UAGCGCaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 127988 0.67 0.916565
Target:  5'- gGGCGCCGgcGgcGGCGgccUCGCGggCGggCGa -3'
miRNA:   3'- -CCGCGGCuuC--UCGU---AGCGCaaGCa-GU- -5'
21390 5' -54.5 NC_004812.1 + 127819 0.69 0.846601
Target:  5'- aGGCGCCGcgccacggccgaaAAGAGCGggGCGUgcUCG-CAg -3'
miRNA:   3'- -CCGCGGC-------------UUCUCGUagCGCA--AGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 127805 0.66 0.958878
Target:  5'- cGGCGUCGggGuccggcucgAGCAgggCGCGcgCG-CAg -3'
miRNA:   3'- -CCGCGGCuuC---------UCGUa--GCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 127566 0.67 0.937737
Target:  5'- gGGCGCgGggGAGgGggCGCGccccccgCGUCu -3'
miRNA:   3'- -CCGCGgCuuCUCgUa-GCGCaa-----GCAGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.