miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 127819 0.69 0.846601
Target:  5'- aGGCGCCGcgccacggccgaaAAGAGCGggGCGUgcUCG-CAg -3'
miRNA:   3'- -CCGCGGC-------------UUCUCGUagCGCA--AGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 141431 0.69 0.839315
Target:  5'- aGGC-CCGGAGGGCggCGCGccacgUGUCGu -3'
miRNA:   3'- -CCGcGGCUUCUCGuaGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 154951 0.71 0.787104
Target:  5'- cGGCGCCGcggccaacggGGGAGCggCGCGUcaUCGaUCc -3'
miRNA:   3'- -CCGCGGC----------UUCUCGuaGCGCA--AGC-AGu -5'
21390 5' -54.5 NC_004812.1 + 69821 0.73 0.62869
Target:  5'- gGGgGCCGAGGGGguUCGcCGUccgCGUCc -3'
miRNA:   3'- -CCgCGGCUUCUCguAGC-GCAa--GCAGu -5'
21390 5' -54.5 NC_004812.1 + 107614 0.68 0.87844
Target:  5'- cGGcCGCCGggGuucacgucugcggccGCGUCGCGgggcaCGUCGc -3'
miRNA:   3'- -CC-GCGGCuuCu--------------CGUAGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 102070 0.69 0.86298
Target:  5'- cGCGCCGGGcgcgccGGGCAccaaCGCGUcCGUCGa -3'
miRNA:   3'- cCGCGGCUU------CUCGUa---GCGCAaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 136476 0.7 0.831039
Target:  5'- gGGCGCCau-GGGCGaCGCGggccUCGUCu -3'
miRNA:   3'- -CCGCGGcuuCUCGUaGCGCa---AGCAGu -5'
21390 5' -54.5 NC_004812.1 + 53555 0.74 0.608216
Target:  5'- gGGCGCCGAggugcuccgGGAGCA-CGCGUacagccgcCGUCGu -3'
miRNA:   3'- -CCGCGGCU---------UCUCGUaGCGCAa-------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 142896 0.69 0.855292
Target:  5'- cGCuGaCCGAGGAGCAcaUGCaGUUCGUCGa -3'
miRNA:   3'- cCG-C-GGCUUCUCGUa-GCG-CAAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 114110 0.75 0.547444
Target:  5'- cGGCGCCGAgcgccAGcGCGUCGCGgaagagUUCGUUg -3'
miRNA:   3'- -CCGCGGCU-----UCuCGUAGCGC------AAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 30535 0.7 0.831039
Target:  5'- cGCGCCGcgggacgggcGGGCGUCGCGcggcgCGUCGc -3'
miRNA:   3'- cCGCGGCuu--------CUCGUAGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 106096 0.69 0.847401
Target:  5'- cGGCGgUGGAGAGCAgcgCGCGggUGa-- -3'
miRNA:   3'- -CCGCgGCUUCUCGUa--GCGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 4573 0.7 0.813953
Target:  5'- gGGCG-CGAAGAGCAggCGCGUgaugagggCGUa- -3'
miRNA:   3'- -CCGCgGCUUCUCGUa-GCGCAa-------GCAgu -5'
21390 5' -54.5 NC_004812.1 + 89289 0.71 0.787104
Target:  5'- cGGCGCgGAGccccGGCGUCGCGcUUCGcgCAg -3'
miRNA:   3'- -CCGCGgCUUc---UCGUAGCGC-AAGCa-GU- -5'
21390 5' -54.5 NC_004812.1 + 4944 0.71 0.758999
Target:  5'- cGGCGCUGGAGGGCGgccgGCGggCGg-- -3'
miRNA:   3'- -CCGCGGCUUCUCGUag--CGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 147026 0.73 0.638936
Target:  5'- gGGCGCUGAgaaAGGGCGUCGaaugcgagGUUCGUUc -3'
miRNA:   3'- -CCGCGGCU---UCUCGUAGCg-------CAAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 81613 0.68 0.904548
Target:  5'- aGGCGgCGGucgacuggcuGGAGCAcgCGCGgcgCGUCu -3'
miRNA:   3'- -CCGCgGCU----------UCUCGUa-GCGCaa-GCAGu -5'
21390 5' -54.5 NC_004812.1 + 48946 0.68 0.884771
Target:  5'- uGGCGCCGAcgcggcGAGCcUCGaCGgggcCGUCGa -3'
miRNA:   3'- -CCGCGGCUu-----CUCGuAGC-GCaa--GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 44125 0.68 0.877725
Target:  5'- gGGUcCgGggGAGCGcgCGCGUUCgGUCGc -3'
miRNA:   3'- -CCGcGgCuuCUCGUa-GCGCAAG-CAGU- -5'
21390 5' -54.5 NC_004812.1 + 52121 0.68 0.877725
Target:  5'- cGgGCCGAucGGCAUCGCG-UCGcCGg -3'
miRNA:   3'- cCgCGGCUucUCGUAGCGCaAGCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.