miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21391 3' -57.8 NC_004812.1 + 71124 0.66 0.849279
Target:  5'- aGGCGCGGGcg----CCUCGGGGGUu- -3'
miRNA:   3'- -UUGCGCCCuaaagaGGGGCCCCUAca -5'
21391 3' -57.8 NC_004812.1 + 40206 0.66 0.849279
Target:  5'- -cCGCGGGGgcUCUgCgCGGGGGUc- -3'
miRNA:   3'- uuGCGCCCUaaAGAgGgGCCCCUAca -5'
21391 3' -57.8 NC_004812.1 + 36889 0.66 0.849279
Target:  5'- uACGCGGGGUgguaggCgCCGGGGGg-- -3'
miRNA:   3'- uUGCGCCCUAaaga--GgGGCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 49663 0.66 0.849279
Target:  5'- cGCGCGGaGAgcgCcgUCUCCGGGGAcGUu -3'
miRNA:   3'- uUGCGCC-CUaaaG--AGGGGCCCCUaCA- -5'
21391 3' -57.8 NC_004812.1 + 81830 0.66 0.841312
Target:  5'- gGGCGCGGGAagUCgccggaggCCCuCGGGGccGc -3'
miRNA:   3'- -UUGCGCCCUaaAGa-------GGG-GCCCCuaCa -5'
21391 3' -57.8 NC_004812.1 + 43426 0.66 0.841312
Target:  5'- gAGCGCGGacauuaUCUCgCCggCGGGGGUGUa -3'
miRNA:   3'- -UUGCGCCcuaa--AGAG-GG--GCCCCUACA- -5'
21391 3' -57.8 NC_004812.1 + 38642 0.66 0.841312
Target:  5'- cAGCGgGGGGUUgaacagCCCCaGGGGcAUGa -3'
miRNA:   3'- -UUGCgCCCUAAaga---GGGG-CCCC-UACa -5'
21391 3' -57.8 NC_004812.1 + 61461 0.66 0.841312
Target:  5'- aAGCGUGGGug-UUUCCCCGcGGAa-- -3'
miRNA:   3'- -UUGCGCCCuaaAGAGGGGCcCCUaca -5'
21391 3' -57.8 NC_004812.1 + 70862 0.66 0.833159
Target:  5'- aGACGCGGGGggcguggCUgCgCGGGGggGg -3'
miRNA:   3'- -UUGCGCCCUaaa----GAgGgGCCCCuaCa -5'
21391 3' -57.8 NC_004812.1 + 75830 0.66 0.833159
Target:  5'- cAGCGCcGGGUggugCUggUCUCGGGGGUGUa -3'
miRNA:   3'- -UUGCGcCCUAaa--GA--GGGGCCCCUACA- -5'
21391 3' -57.8 NC_004812.1 + 24055 0.66 0.824826
Target:  5'- cGACGgGGGAcg-CcgccccucgcgUCCCCGGGGGaaaUGUg -3'
miRNA:   3'- -UUGCgCCCUaaaG-----------AGGGGCCCCU---ACA- -5'
21391 3' -57.8 NC_004812.1 + 149564 0.66 0.824826
Target:  5'- cGACGgGGGAcg-CcgccccucgcgUCCCCGGGGGaaaUGUg -3'
miRNA:   3'- -UUGCgCCCUaaaG-----------AGGGGCCCCU---ACA- -5'
21391 3' -57.8 NC_004812.1 + 82126 0.66 0.824826
Target:  5'- cGACGaCGGGGUggCgggugCCaCGGGGGUGa -3'
miRNA:   3'- -UUGC-GCCCUAaaGa----GGgGCCCCUACa -5'
21391 3' -57.8 NC_004812.1 + 129012 0.66 0.811137
Target:  5'- gGGCGCGGGcccggggccggCggCCCCGGGGgcGg -3'
miRNA:   3'- -UUGCGCCCuaaa-------Ga-GGGGCCCCuaCa -5'
21391 3' -57.8 NC_004812.1 + 3504 0.66 0.811137
Target:  5'- gGGCGCGGGcccggggccggCggCCCCGGGGgcGg -3'
miRNA:   3'- -UUGCGCCCuaaa-------Ga-GGGGCCCCuaCa -5'
21391 3' -57.8 NC_004812.1 + 122345 0.66 0.80765
Target:  5'- gGGCGCGGGGU---UCCCggCGGGGGc-- -3'
miRNA:   3'- -UUGCGCCCUAaagAGGG--GCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 153246 0.66 0.80765
Target:  5'- gGGCGCGGGGU---UCCCggCGGGGGc-- -3'
miRNA:   3'- -UUGCGCCCUAaagAGGG--GCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 25249 0.67 0.798823
Target:  5'- gGGC-CGGGAaccCUCCCCGGGGc--- -3'
miRNA:   3'- -UUGcGCCCUaaaGAGGGGCCCCuaca -5'
21391 3' -57.8 NC_004812.1 + 12849 0.67 0.798823
Target:  5'- gGGCGCGGGAggaa-CCgCGGGGAa-- -3'
miRNA:   3'- -UUGCGCCCUaaagaGGgGCCCCUaca -5'
21391 3' -57.8 NC_004812.1 + 141789 0.67 0.771487
Target:  5'- cGCGCGGGGgggCgggCCgCgCGGGGGUGc -3'
miRNA:   3'- uUGCGCCCUaaaGa--GG-G-GCCCCUACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.