miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 23939 0.66 0.710167
Target:  5'- gGGGagcacaucuagacgaGGUG-GCCaGCGaCCcCGAGGACGu -3'
miRNA:   3'- -CCC---------------CCACuCGGaCGC-GGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 152818 0.66 0.706351
Target:  5'- cGGGccugaGGUcGGGCCUgaGCGCCgggGGGGACu -3'
miRNA:   3'- -CCC-----CCA-CUCGGA--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 64205 0.66 0.706351
Target:  5'- gGGGGGUGucgggcggcccGGCCggcacGCGCUuUCGAuucggagcGGGCGg -3'
miRNA:   3'- -CCCCCAC-----------UCGGa----CGCGG-AGCU--------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 121917 0.66 0.70635
Target:  5'- cGGGccugaGGUcGGGCCUgaGCGCCgggGGGGACu -3'
miRNA:   3'- -CCC-----CCA-CUCGGA--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 106080 0.66 0.70635
Target:  5'- -uGGGUGucgcGGCCUGCGCCUCcucuguccgacuGAGucucgcgaaccGACGg -3'
miRNA:   3'- ccCCCAC----UCGGACGCGGAG------------CUC-----------CUGC- -5'
21392 5' -61.7 NC_004812.1 + 107850 0.66 0.70635
Target:  5'- cGGaGGcGGGgCUcCGCCUcCGAGGGCGg -3'
miRNA:   3'- cCC-CCaCUCgGAcGCGGA-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 81588 0.66 0.70635
Target:  5'- aGGGGGUcGGCUcGgGCgaCGAGGuCGg -3'
miRNA:   3'- -CCCCCAcUCGGaCgCGgaGCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 59525 0.66 0.696771
Target:  5'- aGGGGGcgGuAGCCgagGCGC-UCG-GGACc -3'
miRNA:   3'- -CCCCCa-C-UCGGa--CGCGgAGCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 99319 0.66 0.696771
Target:  5'- aGGGGUGAGaUUUGUaa-UCGGGGGCGa -3'
miRNA:   3'- cCCCCACUC-GGACGcggAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 22914 0.66 0.69677
Target:  5'- gGGGGcGUG-GCC-GCGCCcccgCGccuGGACGc -3'
miRNA:   3'- -CCCC-CACuCGGaCGCGGa---GCu--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 120370 0.66 0.69581
Target:  5'- cGGGGGcGcgcGGCCggggGCGCgUacgcgggcgaccgCGAGGGCGa -3'
miRNA:   3'- -CCCCCaC---UCGGa---CGCGgA-------------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 12366 0.66 0.687141
Target:  5'- cGGGGGgcgcgcccGGCCgcGCgGCCggGAGGGCGa -3'
miRNA:   3'- -CCCCCac------UCGGa-CG-CGGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 124342 0.66 0.687141
Target:  5'- cGGGGGggGAcGCC-GCGgaCCggGAGGACGu -3'
miRNA:   3'- -CCCCCa-CU-CGGaCGC--GGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 103981 0.66 0.687141
Target:  5'- gGGGGGcUGcGGCauaauCUGCGCCUggcUGAGG-CGg -3'
miRNA:   3'- -CCCCC-AC-UCG-----GACGCGGA---GCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 59625 0.66 0.687141
Target:  5'- cGGGGGUGgcGGCCccGCaGCCgcaUGAGGGUGg -3'
miRNA:   3'- -CCCCCAC--UCGGa-CG-CGGa--GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 156371 0.66 0.687141
Target:  5'- gGGGGGgaggaGAGCg-GgGCCgCGGGGGCc -3'
miRNA:   3'- -CCCCCa----CUCGgaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 30863 0.66 0.687141
Target:  5'- gGGGGGgaggaGAGCg-GgGCCgCGGGGGCc -3'
miRNA:   3'- -CCCCCa----CUCGgaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 38624 0.66 0.677471
Target:  5'- cGGGGGUcu-CC-GCGCCgggCGAGGcCGg -3'
miRNA:   3'- -CCCCCAcucGGaCGCGGa--GCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 146969 0.66 0.677471
Target:  5'- cGGGGUGGGaguggGCGCUggggCGAGGgacuGCGg -3'
miRNA:   3'- cCCCCACUCgga--CGCGGa---GCUCC----UGC- -5'
21392 5' -61.7 NC_004812.1 + 29892 0.66 0.677471
Target:  5'- cGGGGGccGGGCC-GgGCCgggCGuGGugGc -3'
miRNA:   3'- -CCCCCa-CUCGGaCgCGGa--GCuCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.