miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21393 3' -58.8 NC_004812.1 + 87126 0.65 0.814807
Target:  5'- cUCUGGguucggcGGCGGCGCGCCAgggCgUgCUCGg -3'
miRNA:   3'- uAGACC-------UCGCUGCGUGGUa--G-AgGGGC- -5'
21393 3' -58.8 NC_004812.1 + 126479 0.66 0.807046
Target:  5'- ---gGGAGCccGGCGUGCCcgC-CCCCGa -3'
miRNA:   3'- uagaCCUCG--CUGCGUGGuaGaGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 10750 0.66 0.807046
Target:  5'- ---cGGcGGCGACGCGCCugcgCgagacuccgUCCCCGg -3'
miRNA:   3'- uagaCC-UCGCUGCGUGGua--G---------AGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 971 0.66 0.807046
Target:  5'- ---gGGAGCccGGCGUGCCcgC-CCCCGa -3'
miRNA:   3'- uagaCCUCG--CUGCGUGGuaGaGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 63460 0.66 0.807046
Target:  5'- ---cGGGGCGGCGC-CCucCUCCCUc -3'
miRNA:   3'- uagaCCUCGCUGCGuGGuaGAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 85569 0.66 0.807046
Target:  5'- ---aGGGGCGGC-CGCC--CUCCCCa -3'
miRNA:   3'- uagaCCUCGCUGcGUGGuaGAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 114289 0.66 0.807046
Target:  5'- uUCUGGAGCGGggucaGCGCCAUggcggCgCCCa -3'
miRNA:   3'- uAGACCUCGCUg----CGUGGUAga---G-GGGc -5'
21393 3' -58.8 NC_004812.1 + 139783 0.66 0.798278
Target:  5'- ---aGG-GCGGCGgcCGCCGUCUCCUCc -3'
miRNA:   3'- uagaCCuCGCUGC--GUGGUAGAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 14605 0.66 0.798278
Target:  5'- cUCgGGccgGGUGGCGUugGCCGUCUCCaCCa -3'
miRNA:   3'- uAGaCC---UCGCUGCG--UGGUAGAGG-GGc -5'
21393 3' -58.8 NC_004812.1 + 20788 0.66 0.789364
Target:  5'- -cCUGGAgcaccuGCGGCGCGCCcgCgucggCgCCCGc -3'
miRNA:   3'- uaGACCU------CGCUGCGUGGuaGa----G-GGGC- -5'
21393 3' -58.8 NC_004812.1 + 102899 0.66 0.789364
Target:  5'- ---cGGGGCGGCGgACCGgcgCCUCGg -3'
miRNA:   3'- uagaCCUCGCUGCgUGGUagaGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 1141 0.66 0.789364
Target:  5'- cAUCUccGGAGCuccuuGCGUccucGCCGUCUCCCgGa -3'
miRNA:   3'- -UAGA--CCUCGc----UGCG----UGGUAGAGGGgC- -5'
21393 3' -58.8 NC_004812.1 + 120173 0.66 0.789364
Target:  5'- cUCUGGGGggccccCGGCcCGCCGUgUCCCUGc -3'
miRNA:   3'- uAGACCUC------GCUGcGUGGUAgAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 96400 0.66 0.789364
Target:  5'- uUCgGGAGCGGCGagGCCGUCUgCaCGg -3'
miRNA:   3'- uAGaCCUCGCUGCg-UGGUAGAgGgGC- -5'
21393 3' -58.8 NC_004812.1 + 151074 0.66 0.789364
Target:  5'- cUCUGGGGggccccCGGCcCGCCGUgUCCCUGc -3'
miRNA:   3'- uAGACCUC------GCUGcGUGGUAgAGGGGC- -5'
21393 3' -58.8 NC_004812.1 + 32042 0.66 0.789364
Target:  5'- cAUCUccGGAGCuccuuGCGUccucGCCGUCUCCCgGa -3'
miRNA:   3'- -UAGA--CCUCGc----UGCG----UGGUAGAGGGgC- -5'
21393 3' -58.8 NC_004812.1 + 53633 0.66 0.789364
Target:  5'- -gCUGGAGCugcccGACGaCACCGaCUacgaCCCCGa -3'
miRNA:   3'- uaGACCUCG-----CUGC-GUGGUaGA----GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 69664 0.66 0.789364
Target:  5'- gGUCUGcGGUuuGGCGCGCCG-CUCCUCu -3'
miRNA:   3'- -UAGACcUCG--CUGCGUGGUaGAGGGGc -5'
21393 3' -58.8 NC_004812.1 + 43439 0.66 0.780312
Target:  5'- uUCUcGGGCGACGCggcccuccgccgACCcUCgcgCCCCGg -3'
miRNA:   3'- uAGAcCUCGCUGCG------------UGGuAGa--GGGGC- -5'
21393 3' -58.8 NC_004812.1 + 97635 0.66 0.780312
Target:  5'- cUCUcGGA-CGGCGcCGCCAUCUcggcCCCCa -3'
miRNA:   3'- uAGA-CCUcGCUGC-GUGGUAGA----GGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.