miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21395 5' -56.4 NC_004812.1 + 130184 1.08 0.003727
Target:  5'- gGACGAGAACGGGGAUCGGAUCCGCGAc -3'
miRNA:   3'- -CUGCUCUUGCCCCUAGCCUAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 153449 0.73 0.561717
Target:  5'- gGGCGGGGggcGCGGGGGggggCGGAggggagcgcggcggCCGCGAc -3'
miRNA:   3'- -CUGCUCU---UGCCCCUa---GCCUa-------------GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 24128 0.73 0.577591
Target:  5'- cGAUGGGGGCGGGGGUgGGGgaagggggggCGCGAa -3'
miRNA:   3'- -CUGCUCUUGCCCCUAgCCUag--------GCGCU- -5'
21395 5' -56.4 NC_004812.1 + 36882 0.66 0.923689
Target:  5'- gGGCGAGuacGCGGGGugguaGGcgCCGgGGg -3'
miRNA:   3'- -CUGCUCu--UGCCCCuag--CCuaGGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 100902 0.76 0.418061
Target:  5'- -cCGAG-GCGGGGcgCGGAgacggCCGCGAg -3'
miRNA:   3'- cuGCUCuUGCCCCuaGCCUa----GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 49149 0.75 0.435504
Target:  5'- aGCGGGcccUGGGGAUCGGcggcgaGUCCGCGAc -3'
miRNA:   3'- cUGCUCuu-GCCCCUAGCC------UAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 89760 0.75 0.444382
Target:  5'- aACGAGuuCGGGGggCGGGUCUGCa- -3'
miRNA:   3'- cUGCUCuuGCCCCuaGCCUAGGCGcu -5'
21395 5' -56.4 NC_004812.1 + 100870 0.75 0.471608
Target:  5'- cGCGGGGgagGCGGGGGagGGcgCCGCGGc -3'
miRNA:   3'- cUGCUCU---UGCCCCUagCCuaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 30589 0.74 0.518755
Target:  5'- gGGCGGGAgacaGCGGGGAcCGGGggCCGgGAg -3'
miRNA:   3'- -CUGCUCU----UGCCCCUaGCCUa-GGCgCU- -5'
21395 5' -56.4 NC_004812.1 + 11981 0.73 0.557766
Target:  5'- cGCGGGGGCGGGGuuccgccggCGGGcuccggucUCCGCGGa -3'
miRNA:   3'- cUGCUCUUGCCCCua-------GCCU--------AGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 4978 0.73 0.538139
Target:  5'- cGGCGAG-GCGGGGGcgaCGGGUCCGgGu -3'
miRNA:   3'- -CUGCUCuUGCCCCUa--GCCUAGGCgCu -5'
21395 5' -56.4 NC_004812.1 + 25307 0.74 0.499653
Target:  5'- cGACG-GAGCGGGGucgaGGAggaacgCCGCGAg -3'
miRNA:   3'- -CUGCuCUUGCCCCuag-CCUa-----GGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 38592 0.79 0.294988
Target:  5'- gGGCGGGcGCGGGGGUCGcGccgaGUCCGCGGc -3'
miRNA:   3'- -CUGCUCuUGCCCCUAGC-C----UAGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 134679 0.73 0.547925
Target:  5'- cGCGAGGAgGGGGG-CGGAgCCGcCGAg -3'
miRNA:   3'- cUGCUCUUgCCCCUaGCCUaGGC-GCU- -5'
21395 5' -56.4 NC_004812.1 + 33218 0.78 0.308705
Target:  5'- --gGAGGACGGGGGcaUCGGGggucUCCGCGGa -3'
miRNA:   3'- cugCUCUUGCCCCU--AGCCU----AGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 1423 0.75 0.471608
Target:  5'- cGGCGGccGCGGGGAggggcCGGggCCGCGAg -3'
miRNA:   3'- -CUGCUcuUGCCCCUa----GCCuaGGCGCU- -5'
21395 5' -56.4 NC_004812.1 + 95979 0.73 0.557766
Target:  5'- cGACGAGGugaccgucgGCGGGGA-CGcGGUCCGCc- -3'
miRNA:   3'- -CUGCUCU---------UGCCCCUaGC-CUAGGCGcu -5'
21395 5' -56.4 NC_004812.1 + 23597 0.73 0.567657
Target:  5'- cGCG-GGGCGGGGGUUGGGcgccccggucgUCCGCGc -3'
miRNA:   3'- cUGCuCUUGCCCCUAGCCU-----------AGGCGCu -5'
21395 5' -56.4 NC_004812.1 + 59311 0.77 0.376374
Target:  5'- cGCGAGcucguggucGACGGGGGUCGGGUCCcaCGAc -3'
miRNA:   3'- cUGCUC---------UUGCCCCUAGCCUAGGc-GCU- -5'
21395 5' -56.4 NC_004812.1 + 57003 0.75 0.444382
Target:  5'- gGugGuGAGCGGGGGccugCGGAUCCcCGAg -3'
miRNA:   3'- -CugCuCUUGCCCCUa---GCCUAGGcGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.