miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21397 3' -54.2 NC_004812.1 + 155582 0.66 0.958235
Target:  5'- cGCGGgGUUguAGCCGCgUG-ACGUCAAu -3'
miRNA:   3'- -CGCCgUAG--UCGGUGgACcUGUAGUUc -5'
21397 3' -54.2 NC_004812.1 + 5502 0.66 0.958235
Target:  5'- gGCGGCggCGGCCGCggGGaagGCGUCc-- -3'
miRNA:   3'- -CGCCGuaGUCGGUGgaCC---UGUAGuuc -5'
21397 3' -54.2 NC_004812.1 + 131010 0.66 0.958235
Target:  5'- gGCGGCggCGGCCGCggGGaagGCGUCc-- -3'
miRNA:   3'- -CGCCGuaGUCGGUGgaCC---UGUAGuuc -5'
21397 3' -54.2 NC_004812.1 + 101302 0.66 0.958235
Target:  5'- -gGGCGUCGGCCcgcgccgagcccACCUcGGCGUgCAGGc -3'
miRNA:   3'- cgCCGUAGUCGG------------UGGAcCUGUA-GUUC- -5'
21397 3' -54.2 NC_004812.1 + 90293 0.66 0.958235
Target:  5'- cGCgGGCGaCGGgCGCCUGGGCGccgccagccgCGAGg -3'
miRNA:   3'- -CG-CCGUaGUCgGUGGACCUGUa---------GUUC- -5'
21397 3' -54.2 NC_004812.1 + 138770 0.66 0.958235
Target:  5'- uGUGGCGcucgauccCGGCCGCCUGGGuCGUg--- -3'
miRNA:   3'- -CGCCGUa-------GUCGGUGGACCU-GUAguuc -5'
21397 3' -54.2 NC_004812.1 + 124681 0.66 0.958235
Target:  5'- cGCGGgGUUguAGCCGCgUG-ACGUCAAu -3'
miRNA:   3'- -CGCCgUAG--UCGGUGgACcUGUAGUUc -5'
21397 3' -54.2 NC_004812.1 + 2485 0.66 0.954372
Target:  5'- cCGGCggCGGCgGCCUcgcGGGCGggCGAGu -3'
miRNA:   3'- cGCCGuaGUCGgUGGA---CCUGUa-GUUC- -5'
21397 3' -54.2 NC_004812.1 + 117393 0.66 0.954372
Target:  5'- cGUGGCccgGGCCACgCUGGugGcCGAGc -3'
miRNA:   3'- -CGCCGuagUCGGUG-GACCugUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 106701 0.66 0.954372
Target:  5'- uCGGCGUCgGGCC-CCgggGGGCccUCGGGg -3'
miRNA:   3'- cGCCGUAG-UCGGuGGa--CCUGu-AGUUC- -5'
21397 3' -54.2 NC_004812.1 + 145479 0.66 0.954372
Target:  5'- aGUGGCGUUGGCC-CgCUGG-CA-CAGGa -3'
miRNA:   3'- -CGCCGUAGUCGGuG-GACCuGUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 30244 0.66 0.954372
Target:  5'- cGgGGCucgCGGCCGCggGGACAcgcgCGGGg -3'
miRNA:   3'- -CgCCGua-GUCGGUGgaCCUGUa---GUUC- -5'
21397 3' -54.2 NC_004812.1 + 25718 0.66 0.954372
Target:  5'- cGUGGUuguucAUCAGCCACUgGGGCGagAAa -3'
miRNA:   3'- -CGCCG-----UAGUCGGUGGaCCUGUagUUc -5'
21397 3' -54.2 NC_004812.1 + 155752 0.66 0.954372
Target:  5'- cGgGGCucgCGGCCGCggGGACAcgcgCGGGg -3'
miRNA:   3'- -CgCCGua-GUCGGUGgaCCUGUa---GUUC- -5'
21397 3' -54.2 NC_004812.1 + 75805 0.66 0.954372
Target:  5'- uGCGGCGggCGGCCGCgaGcGGCggCAGc -3'
miRNA:   3'- -CGCCGUa-GUCGGUGgaC-CUGuaGUUc -5'
21397 3' -54.2 NC_004812.1 + 127993 0.66 0.954372
Target:  5'- cCGGCggCGGCgGCCUcgcGGGCGggCGAGu -3'
miRNA:   3'- cGCCGuaGUCGgUGGA---CCUGUa-GUUC- -5'
21397 3' -54.2 NC_004812.1 + 64185 0.66 0.954372
Target:  5'- gGCGGCGggGGCCggcacgugggauACCaGGGCGcCAAGg -3'
miRNA:   3'- -CGCCGUagUCGG------------UGGaCCUGUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 87976 0.66 0.954372
Target:  5'- aGCGccuCAUCcGCUACCUGGAgGgCGAGa -3'
miRNA:   3'- -CGCc--GUAGuCGGUGGACCUgUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 98542 0.66 0.954372
Target:  5'- cGCGGCcUCGG-CGCC-GGGCGcCGGGg -3'
miRNA:   3'- -CGCCGuAGUCgGUGGaCCUGUaGUUC- -5'
21397 3' -54.2 NC_004812.1 + 124797 0.66 0.954372
Target:  5'- cGCGGCAcCAcuacGCCACCaagGGGCGguUCGu- -3'
miRNA:   3'- -CGCCGUaGU----CGGUGGa--CCUGU--AGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.