miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21398 3' -56.5 NC_004812.1 + 6198 0.66 0.879927
Target:  5'- ----cCCGggGCGcccGGCGGCCCgcgGACg -3'
miRNA:   3'- uauaaGGCgaCGCa--CUGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 37099 0.66 0.879927
Target:  5'- ----cCCGggGCGcccGGCGGCCCgcgGACg -3'
miRNA:   3'- uauaaGGCgaCGCa--CUGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 103402 0.66 0.872677
Target:  5'- ----cCUGCUccGCGUaGACGGCCCagaggaucucccUGACg -3'
miRNA:   3'- uauaaGGCGA--CGCA-CUGCCGGG------------ACUG- -5'
21398 3' -56.5 NC_004812.1 + 109709 0.66 0.872677
Target:  5'- ----gCCGCcGCGcUGGCGGCCgCgcugGGCa -3'
miRNA:   3'- uauaaGGCGaCGC-ACUGCCGG-Ga---CUG- -5'
21398 3' -56.5 NC_004812.1 + 119867 0.66 0.872677
Target:  5'- ----aCCaGCUGCG-GACGGgCCUGcACc -3'
miRNA:   3'- uauaaGG-CGACGCaCUGCCgGGAC-UG- -5'
21398 3' -56.5 NC_004812.1 + 128854 0.66 0.857524
Target:  5'- ----cCCGCcccUGCGggccgcgGGCGGCCCgcUGACc -3'
miRNA:   3'- uauaaGGCG---ACGCa------CUGCCGGG--ACUG- -5'
21398 3' -56.5 NC_004812.1 + 79619 0.66 0.857524
Target:  5'- ----gCCGCgGUGagGGCGGCCgUGGCc -3'
miRNA:   3'- uauaaGGCGaCGCa-CUGCCGGgACUG- -5'
21398 3' -56.5 NC_004812.1 + 86078 0.66 0.857524
Target:  5'- ----gUCGCaGCGcgcUGGCGGUCCUGAUc -3'
miRNA:   3'- uauaaGGCGaCGC---ACUGCCGGGACUG- -5'
21398 3' -56.5 NC_004812.1 + 96261 0.66 0.849635
Target:  5'- ---gUCCGagGCGcgGGCGGgCCUGGCg -3'
miRNA:   3'- uauaAGGCgaCGCa-CUGCCgGGACUG- -5'
21398 3' -56.5 NC_004812.1 + 130564 0.66 0.849635
Target:  5'- ---gUCUGCUGCGgggcguccGGgGGCCCcugGACg -3'
miRNA:   3'- uauaAGGCGACGCa-------CUgCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 130988 0.66 0.849635
Target:  5'- cUGUUCCGCuacUGCGUGGgGcGCgCCgacGACg -3'
miRNA:   3'- uAUAAGGCG---ACGCACUgC-CG-GGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 105091 0.67 0.841544
Target:  5'- ----gCCGCUGCGccgggGGCGGgaCCCUGcGCg -3'
miRNA:   3'- uauaaGGCGACGCa----CUGCC--GGGAC-UG- -5'
21398 3' -56.5 NC_004812.1 + 124221 0.67 0.841544
Target:  5'- -gAggCCGCgGCGcaccUGGCGGCgggCCUGGCg -3'
miRNA:   3'- uaUaaGGCGaCGC----ACUGCCG---GGACUG- -5'
21398 3' -56.5 NC_004812.1 + 23141 0.67 0.841544
Target:  5'- ---gUCCuGCUGC-UGGCGcacagcgucagcGCCCUGGCg -3'
miRNA:   3'- uauaAGG-CGACGcACUGC------------CGGGACUG- -5'
21398 3' -56.5 NC_004812.1 + 1281 0.67 0.841544
Target:  5'- ----gCCGCggGCG-GGCGGUCCgagGGCg -3'
miRNA:   3'- uauaaGGCGa-CGCaCUGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 32182 0.67 0.841544
Target:  5'- ----gCCGCggGCG-GGCGGUCCgagGGCg -3'
miRNA:   3'- uauaaGGCGa-CGCaCUGCCGGGa--CUG- -5'
21398 3' -56.5 NC_004812.1 + 130825 0.67 0.839903
Target:  5'- ----cCUGCUGCGgcgggggcugacGACGGCCUcGACg -3'
miRNA:   3'- uauaaGGCGACGCa-----------CUGCCGGGaCUG- -5'
21398 3' -56.5 NC_004812.1 + 100137 0.67 0.83326
Target:  5'- ---gUCUGCuucgaggagcugUGCGUGACGGCCaaccagggGGCg -3'
miRNA:   3'- uauaAGGCG------------ACGCACUGCCGGga------CUG- -5'
21398 3' -56.5 NC_004812.1 + 129421 0.67 0.83326
Target:  5'- ----gUCGCUGCGgcgGGCcGUCCUGGCc -3'
miRNA:   3'- uauaaGGCGACGCa--CUGcCGGGACUG- -5'
21398 3' -56.5 NC_004812.1 + 43157 0.67 0.83326
Target:  5'- ---gUCCGCgacacCGcGGCGGCCCgGGCg -3'
miRNA:   3'- uauaAGGCGac---GCaCUGCCGGGaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.