miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21399 3' -55.6 NC_004812.1 + 7640 0.66 0.928592
Target:  5'- cGGCCGgggucgGGGCGCgaaGCugCgGGCCcGCGg -3'
miRNA:   3'- -CUGGUa-----CUUGCG---CGugGaCCGGuUGC- -5'
21399 3' -55.6 NC_004812.1 + 36770 0.66 0.928592
Target:  5'- --aCAUGGGCGCGgGCCggggGGCgCGggcGCGg -3'
miRNA:   3'- cugGUACUUGCGCgUGGa---CCG-GU---UGC- -5'
21399 3' -55.6 NC_004812.1 + 104901 0.66 0.928592
Target:  5'- cGCCGUGGcgcAgGCGCucuuCCUGGCacGCGg -3'
miRNA:   3'- cUGGUACU---UgCGCGu---GGACCGguUGC- -5'
21399 3' -55.6 NC_004812.1 + 213 0.66 0.928592
Target:  5'- gGGCCcgGGuCGCGCAgcCCcGGCCcccGCGg -3'
miRNA:   3'- -CUGGuaCUuGCGCGU--GGaCCGGu--UGC- -5'
21399 3' -55.6 NC_004812.1 + 84632 0.66 0.928592
Target:  5'- cGACCcUGGcgACGcCGCGCCagacGGCCAccACGc -3'
miRNA:   3'- -CUGGuACU--UGC-GCGUGGa---CCGGU--UGC- -5'
21399 3' -55.6 NC_004812.1 + 83103 0.66 0.928592
Target:  5'- cGGCCuccUGuucGGCaCGCGCCUGGCgGACu -3'
miRNA:   3'- -CUGGu--AC---UUGcGCGUGGACCGgUUGc -5'
21399 3' -55.6 NC_004812.1 + 127872 0.66 0.928592
Target:  5'- gGGCCcgGcGCGCGCGgCgucgcGGuCCAGCGc -3'
miRNA:   3'- -CUGGuaCuUGCGCGUgGa----CC-GGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 75187 0.66 0.928592
Target:  5'- gGGCCccGGACGC-CA--UGGCCGACGc -3'
miRNA:   3'- -CUGGuaCUUGCGcGUggACCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 104051 0.66 0.928592
Target:  5'- gGGCCucggGGACGUGgGCCgcgcGGUCGGCa -3'
miRNA:   3'- -CUGGua--CUUGCGCgUGGa---CCGGUUGc -5'
21399 3' -55.6 NC_004812.1 + 57293 0.66 0.928592
Target:  5'- gGGCCGagugGAugGUGCAgacGGCCGACGc -3'
miRNA:   3'- -CUGGUa---CUugCGCGUggaCCGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 67636 0.66 0.928592
Target:  5'- uGGCCAgGGACG-GCuggggccCCUGGCCGcCGg -3'
miRNA:   3'- -CUGGUaCUUGCgCGu------GGACCGGUuGC- -5'
21399 3' -55.6 NC_004812.1 + 5869 0.66 0.928592
Target:  5'- --aCAUGGGCGCGgGCCggggGGCgCGggcGCGg -3'
miRNA:   3'- cugGUACUUGCGCgUGGa---CCG-GU---UGC- -5'
21399 3' -55.6 NC_004812.1 + 75331 0.66 0.928592
Target:  5'- aGGCCGUGuccuugacCG-GCGCCUGGUCcACGc -3'
miRNA:   3'- -CUGGUACuu------GCgCGUGGACCGGuUGC- -5'
21399 3' -55.6 NC_004812.1 + 48039 0.66 0.928592
Target:  5'- uGCCcgagcgGGGCGCGCGCCa--CCAGCGa -3'
miRNA:   3'- cUGGua----CUUGCGCGUGGaccGGUUGC- -5'
21399 3' -55.6 NC_004812.1 + 125722 0.66 0.928592
Target:  5'- gGGCCcgGGuCGCGCAgcCCcGGCCccGCGg -3'
miRNA:   3'- -CUGGuaCUuGCGCGU--GGaCCGGu-UGC- -5'
21399 3' -55.6 NC_004812.1 + 144181 0.66 0.928592
Target:  5'- -uCCGUGGAguCGCGgGagCUGGCCAugGc -3'
miRNA:   3'- cuGGUACUU--GCGCgUg-GACCGGUugC- -5'
21399 3' -55.6 NC_004812.1 + 98628 0.66 0.928592
Target:  5'- cGGCCGUcgcGGccGCGCuGCGCCcgGGCgCGACGc -3'
miRNA:   3'- -CUGGUA---CU--UGCG-CGUGGa-CCG-GUUGC- -5'
21399 3' -55.6 NC_004812.1 + 47989 0.66 0.928592
Target:  5'- cGGCCAgc-ACGCGCGCCUcguGGUgcACGa -3'
miRNA:   3'- -CUGGUacuUGCGCGUGGA---CCGguUGC- -5'
21399 3' -55.6 NC_004812.1 + 59931 0.66 0.928592
Target:  5'- cGGCCcacucGAGCGCGguggucacCugCUGGCCcACGg -3'
miRNA:   3'- -CUGGua---CUUGCGC--------GugGACCGGuUGC- -5'
21399 3' -55.6 NC_004812.1 + 2364 0.66 0.928592
Target:  5'- gGGCCcgGcGCGCGCGgCgucgcGGuCCAGCGc -3'
miRNA:   3'- -CUGGuaCuUGCGCGUgGa----CC-GGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.