miRNA display CGI


Results 1 - 20 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21400 3' -61.3 NC_004812.1 + 44321 0.66 0.743113
Target:  5'- cGAGCuCGGcCCGGgCGggCG-CGGCCc -3'
miRNA:   3'- aCUCGuGCCcGGCCaGCa-GCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 128240 0.66 0.743113
Target:  5'- -cGGCGCGGcGCaGGUCGcgCG-CGGCg -3'
miRNA:   3'- acUCGUGCC-CGgCCAGCa-GCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 139347 0.66 0.743113
Target:  5'- cGAagGCGGaGgCGGUCG-CGUgGGCCc -3'
miRNA:   3'- aCUcgUGCC-CgGCCAGCaGCAgCCGG- -5'
21400 3' -61.3 NC_004812.1 + 12184 0.66 0.743113
Target:  5'- -cGGCGCGGGaacuuCCGaGcCGcCGUCGcGCCg -3'
miRNA:   3'- acUCGUGCCC-----GGC-CaGCaGCAGC-CGG- -5'
21400 3' -61.3 NC_004812.1 + 314 0.66 0.743113
Target:  5'- aGAGCGCGGGCaaccaGcaCGUCGggaGGUg -3'
miRNA:   3'- aCUCGUGCCCGg----CcaGCAGCag-CCGg -5'
21400 3' -61.3 NC_004812.1 + 155247 0.66 0.743113
Target:  5'- cGAGgGCGGGCCGaGggGgggCG-CGGCg -3'
miRNA:   3'- aCUCgUGCCCGGC-CagCa--GCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 31215 0.66 0.743113
Target:  5'- aGAGCGCGGGCaaccaGcaCGUCGggaGGUg -3'
miRNA:   3'- aCUCGUGCCCGg----CcaGCAGCag-CCGg -5'
21400 3' -61.3 NC_004812.1 + 29739 0.66 0.743113
Target:  5'- cGAGgGCGGGCCGaGggGgggCG-CGGCg -3'
miRNA:   3'- aCUCgUGCCCGGC-CagCa--GCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 2732 0.66 0.743113
Target:  5'- -cGGCGCGGcGCaGGUCGcgCG-CGGCg -3'
miRNA:   3'- acUCGUGCC-CGgCCAGCa-GCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 51190 0.66 0.743113
Target:  5'- cGGGCGCGGgcGCCGGgcccCGccgagCGcCGGCa -3'
miRNA:   3'- aCUCGUGCC--CGGCCa---GCa----GCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 123545 0.66 0.743113
Target:  5'- aGAGgGCGGGgCGGagG-CGg-GGCCg -3'
miRNA:   3'- aCUCgUGCCCgGCCagCaGCagCCGG- -5'
21400 3' -61.3 NC_004812.1 + 82239 0.66 0.743113
Target:  5'- cGGGCGCGGGCgGGacccCGcCGccCGcGCCc -3'
miRNA:   3'- aCUCGUGCCCGgCCa---GCaGCa-GC-CGG- -5'
21400 3' -61.3 NC_004812.1 + 30173 0.66 0.743113
Target:  5'- gGAGCGCGcGGCgGGcUCGgcgcgcgCGagGGCg -3'
miRNA:   3'- aCUCGUGC-CCGgCC-AGCa------GCagCCGg -5'
21400 3' -61.3 NC_004812.1 + 36139 0.66 0.743113
Target:  5'- gGAGgccCACGGGuuGGcCGUgG-CGGCg -3'
miRNA:   3'- aCUC---GUGCCCggCCaGCAgCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 53470 0.66 0.743113
Target:  5'- aGAcGCAgCGGGcCCGGUCGUCcg-GGUa -3'
miRNA:   3'- aCU-CGU-GCCC-GGCCAGCAGcagCCGg -5'
21400 3' -61.3 NC_004812.1 + 130735 0.66 0.743113
Target:  5'- cGAGCgGCGucGGCCucgcGGcCGUCGgggcgcgccgagUCGGCCg -3'
miRNA:   3'- aCUCG-UGC--CCGG----CCaGCAGC------------AGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 46914 0.66 0.742188
Target:  5'- -cAGCGCGGcGgCGGUgGUgGUCuuccccaGGCCg -3'
miRNA:   3'- acUCGUGCC-CgGCCAgCAgCAG-------CCGG- -5'
21400 3' -61.3 NC_004812.1 + 105881 0.66 0.733833
Target:  5'- gUGGGCGCGcggugcGCUGGcgcucgCGUCGU-GGCCu -3'
miRNA:   3'- -ACUCGUGCc-----CGGCCa-----GCAGCAgCCGG- -5'
21400 3' -61.3 NC_004812.1 + 37272 0.66 0.733833
Target:  5'- cUGGGCGgggugcagcgggUGGGCCGuGUcCGUCGcCGGauCCg -3'
miRNA:   3'- -ACUCGU------------GCCCGGC-CA-GCAGCaGCC--GG- -5'
21400 3' -61.3 NC_004812.1 + 127755 0.66 0.733833
Target:  5'- -cGGCGCGGcGgCGGggucCG-CGUCGGCg -3'
miRNA:   3'- acUCGUGCC-CgGCCa---GCaGCAGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.