miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21401 3' -64.1 NC_004812.1 + 156409 0.67 0.512756
Target:  5'- gCGAC-CCGGgcccuccCCCGGcGGCGCGCGc- -3'
miRNA:   3'- -GCUGcGGCCac-----GGGCU-CCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 156163 0.7 0.354569
Target:  5'- gGACGCgCGGga-CCGGGGCcGCGCGa- -3'
miRNA:   3'- gCUGCG-GCCacgGGCUCCG-CGCGCac -5'
21401 3' -64.1 NC_004812.1 + 156158 0.75 0.177098
Target:  5'- -cGCGCCGGcgGCCCGggcucgcggcGGGCGCGCGc- -3'
miRNA:   3'- gcUGCGGCCa-CGGGC----------UCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 156076 0.72 0.256192
Target:  5'- gGAgGCgGGaggGCCCG-GGCGCGCGg- -3'
miRNA:   3'- gCUgCGgCCa--CGGGCuCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 156023 0.69 0.408813
Target:  5'- gGACGcCCGGgGCCgGGGGCcGCGCc-- -3'
miRNA:   3'- gCUGC-GGCCaCGGgCUCCG-CGCGcac -5'
21401 3' -64.1 NC_004812.1 + 155910 0.66 0.576267
Target:  5'- cCGACGCCGacggagcuccgGaCCCGGGGaCGCGCu-- -3'
miRNA:   3'- -GCUGCGGCca---------C-GGGCUCC-GCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 155898 0.67 0.531175
Target:  5'- gCGGgGCCGGcGCCCGGGcugcCGCGCc-- -3'
miRNA:   3'- -GCUgCGGCCaCGGGCUCc---GCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 155855 0.75 0.16104
Target:  5'- gCGGCGCCGGgaggCGAGGCGCGCGc- -3'
miRNA:   3'- -GCUGCGGCCacggGCUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 155684 0.7 0.347246
Target:  5'- -aGCGCCGGcggGCUCGGcGCGCGCGa- -3'
miRNA:   3'- gcUGCGGCCa--CGGGCUcCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 155586 0.68 0.476752
Target:  5'- gGGCgGCCGG-GCCCucgcGGGgGCGCGg- -3'
miRNA:   3'- gCUG-CGGCCaCGGGc---UCCgCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 155212 0.67 0.521934
Target:  5'- uCGGgGCCGG-GCCgCGAagagcgggccuuGGUGCGCGa- -3'
miRNA:   3'- -GCUgCGGCCaCGG-GCU------------CCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 154867 0.72 0.286262
Target:  5'- gGGCGCgGGcucggGCCgCgGAGGCGCGCGg- -3'
miRNA:   3'- gCUGCGgCCa----CGG-G-CUCCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 154329 0.67 0.512756
Target:  5'- cCGACGCCGcGccGCUCGugcuGCGCGCGg- -3'
miRNA:   3'- -GCUGCGGC-Ca-CGGGCuc--CGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 153861 0.7 0.347246
Target:  5'- gCGACGuCCGcugGCCCGccGCGCGCGa- -3'
miRNA:   3'- -GCUGC-GGCca-CGGGCucCGCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 153786 0.67 0.531175
Target:  5'- aGugGCCGGccgacggGCCCGccGuCGCGCGc- -3'
miRNA:   3'- gCugCGGCCa------CGGGCucC-GCGCGCac -5'
21401 3' -64.1 NC_004812.1 + 153651 0.67 0.540475
Target:  5'- uCGGCGCUGG-GCgCGcaGGGCGUGCu-- -3'
miRNA:   3'- -GCUGCGGCCaCGgGC--UCCGCGCGcac -5'
21401 3' -64.1 NC_004812.1 + 153448 0.67 0.540475
Target:  5'- aGGuCGCCGac-CCCGAGGacguGCGCGUGc -3'
miRNA:   3'- gCU-GCGGCcacGGGCUCCg---CGCGCAC- -5'
21401 3' -64.1 NC_004812.1 + 153365 0.67 0.531175
Target:  5'- gGGCGCgGGcGCCCcuggcGGGCGcCGgGUGg -3'
miRNA:   3'- gCUGCGgCCaCGGGc----UCCGC-GCgCAC- -5'
21401 3' -64.1 NC_004812.1 + 153324 0.71 0.325931
Target:  5'- gGACGCgCGGUggGCCCG-GGCG-GCGUc -3'
miRNA:   3'- gCUGCG-GCCA--CGGGCuCCGCgCGCAc -5'
21401 3' -64.1 NC_004812.1 + 153264 0.71 0.319046
Target:  5'- gGGgGCCGGgGCgCGGGGCGCgGCGg- -3'
miRNA:   3'- gCUgCGGCCaCGgGCUCCGCG-CGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.