miRNA display CGI


Results 1 - 20 of 481 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21402 5' -63.6 NC_004812.1 + 82158 0.66 0.626542
Target:  5'- uGGAcGAGUUCcGGGGCgCGCGGgCCCu -3'
miRNA:   3'- -UCUcCUCGAGcCCCUG-GCGCUgGGGc -5'
21402 5' -63.6 NC_004812.1 + 30378 0.66 0.626542
Target:  5'- gGGAGGGGaggggCGGGGcCgGCG-CCCgGg -3'
miRNA:   3'- -UCUCCUCga---GCCCCuGgCGCuGGGgC- -5'
21402 5' -63.6 NC_004812.1 + 70383 0.66 0.626542
Target:  5'- -uGGGGGUcguggaUUGGGGuGCCGCGAUCCg- -3'
miRNA:   3'- ucUCCUCG------AGCCCC-UGGCGCUGGGgc -5'
21402 5' -63.6 NC_004812.1 + 73224 0.66 0.626542
Target:  5'- uGGAGGcGGC-CGGccugcGGACCGCcgccGCCCUGg -3'
miRNA:   3'- -UCUCC-UCGaGCC-----CCUGGCGc---UGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 25923 0.66 0.626542
Target:  5'- cGGAgucGGAGUcggagUCGGaGGACCG-GGCCCgGa -3'
miRNA:   3'- -UCU---CCUCG-----AGCC-CCUGGCgCUGGGgC- -5'
21402 5' -63.6 NC_004812.1 + 36565 0.66 0.626542
Target:  5'- gAGGGGAGCcCgcaggggcacgGGGGGCCGgGGgucUCCCa -3'
miRNA:   3'- -UCUCCUCGaG-----------CCCCUGGCgCU---GGGGc -5'
21402 5' -63.6 NC_004812.1 + 138416 0.66 0.626542
Target:  5'- uGGGGGGUcgCGGagacgccgucGGACCGCGGggaCCCGc -3'
miRNA:   3'- uCUCCUCGa-GCC----------CCUGGCGCUg--GGGC- -5'
21402 5' -63.6 NC_004812.1 + 155886 0.66 0.626542
Target:  5'- gGGAGGGGaggggCGGGGcCgGCG-CCCgGg -3'
miRNA:   3'- -UCUCCUCga---GCCCCuGgCGCuGGGgC- -5'
21402 5' -63.6 NC_004812.1 + 96391 0.66 0.626542
Target:  5'- gAGAuGGAGUUCGGGaGCgGCGAggCCGu -3'
miRNA:   3'- -UCU-CCUCGAGCCCcUGgCGCUggGGC- -5'
21402 5' -63.6 NC_004812.1 + 44602 0.66 0.626542
Target:  5'- aGGuGGuGCUCGuGGcCCGCGuCCUCGu -3'
miRNA:   3'- -UCuCCuCGAGCcCCuGGCGCuGGGGC- -5'
21402 5' -63.6 NC_004812.1 + 59776 0.66 0.626542
Target:  5'- uGuGGGGCcggUGGGGGCgGCGcCCUCa -3'
miRNA:   3'- uCuCCUCGa--GCCCCUGgCGCuGGGGc -5'
21402 5' -63.6 NC_004812.1 + 61485 0.66 0.626542
Target:  5'- cGAGGAcCgCGGucccGACCGCGAaCCCCa -3'
miRNA:   3'- uCUCCUcGaGCCc---CUGGCGCU-GGGGc -5'
21402 5' -63.6 NC_004812.1 + 20850 0.66 0.626542
Target:  5'- cGuGG-GCggagGGGGGCuCGUGGCCCCu -3'
miRNA:   3'- uCuCCuCGag--CCCCUG-GCGCUGGGGc -5'
21402 5' -63.6 NC_004812.1 + 115849 0.66 0.626542
Target:  5'- cAGGGGAaccccGCUCGGGGcucCCGCG-CCaacaucgugCCGa -3'
miRNA:   3'- -UCUCCU-----CGAGCCCCu--GGCGCuGG---------GGC- -5'
21402 5' -63.6 NC_004812.1 + 9009 0.66 0.626542
Target:  5'- -uGGGcGCUUGGGGccguauCUGCGGCCCg- -3'
miRNA:   3'- ucUCCuCGAGCCCCu-----GGCGCUGGGgc -5'
21402 5' -63.6 NC_004812.1 + 148516 0.66 0.626542
Target:  5'- cGGGGGAGg--GGGGGCgGCGcggGCCgCCGg -3'
miRNA:   3'- -UCUCCUCgagCCCCUGgCGC---UGG-GGC- -5'
21402 5' -63.6 NC_004812.1 + 99494 0.66 0.626542
Target:  5'- cAGAcauGGCaUCGGGGccgACCGCGGCCgCGu -3'
miRNA:   3'- -UCUcc-UCG-AGCCCC---UGGCGCUGGgGC- -5'
21402 5' -63.6 NC_004812.1 + 117615 0.66 0.626542
Target:  5'- cGGGGGAGg--GGGGGCgGCGcggGCCgCCGg -3'
miRNA:   3'- -UCUCCUCgagCCCCUGgCGC---UGG-GGC- -5'
21402 5' -63.6 NC_004812.1 + 5664 0.66 0.626542
Target:  5'- gAGGGGAGCcCgcaggggcacgGGGGGCCGgGGgucUCCCa -3'
miRNA:   3'- -UCUCCUCGaG-----------CCCCUGGCgCU---GGGGc -5'
21402 5' -63.6 NC_004812.1 + 44323 0.66 0.625579
Target:  5'- gGGAGG-GCaCGGGGcgguggugggcggGCUgGUGGCCCCGc -3'
miRNA:   3'- -UCUCCuCGaGCCCC-------------UGG-CGCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.