miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21404 5' -59.1 NC_004812.1 + 50514 0.65 0.818593
Target:  5'- aCCCGc-GCGCUGcucuccACCGCCGuaaacaacaugauGCUGCGc -3'
miRNA:   3'- -GGGCacCGCGACa-----UGGUGGU-------------CGACGC- -5'
21404 5' -59.1 NC_004812.1 + 73254 0.66 0.810971
Target:  5'- cCCCcaGGCGg---GCCGCCAGCaGCGc -3'
miRNA:   3'- -GGGcaCCGCgacaUGGUGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 123893 0.66 0.810971
Target:  5'- cCCCGacggGGCgGCcccgacGU-CCGCCAuGCUGCGg -3'
miRNA:   3'- -GGGCa---CCG-CGa-----CAuGGUGGU-CGACGC- -5'
21404 5' -59.1 NC_004812.1 + 9765 0.66 0.810971
Target:  5'- gCCCGcGGCGC---GCCGgCGGCcGCGc -3'
miRNA:   3'- -GGGCaCCGCGacaUGGUgGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 90956 0.66 0.810971
Target:  5'- uCCCGcGGgGCUccgGUAggggcuCCACCGGCUcgaGCGa -3'
miRNA:   3'- -GGGCaCCgCGA---CAU------GGUGGUCGA---CGC- -5'
21404 5' -59.1 NC_004812.1 + 154794 0.66 0.810971
Target:  5'- cCCCGacggGGCgGCcccgacGU-CCGCCAuGCUGCGg -3'
miRNA:   3'- -GGGCa---CCG-CGa-----CAuGGUGGU-CGACGC- -5'
21404 5' -59.1 NC_004812.1 + 126801 0.66 0.810971
Target:  5'- uCUCGUcguacGCGagccguCUGUuuGCCACCAGCUGCc -3'
miRNA:   3'- -GGGCAc----CGC------GACA--UGGUGGUCGACGc -5'
21404 5' -59.1 NC_004812.1 + 72291 0.66 0.810971
Target:  5'- gCCCGgGGCGCU---CC-CCGGCgacGCGg -3'
miRNA:   3'- -GGGCaCCGCGAcauGGuGGUCGa--CGC- -5'
21404 5' -59.1 NC_004812.1 + 82670 0.66 0.810971
Target:  5'- uUCCGgcucuucgGGCGCUucGUgcgccACCGCCAGCcggGCu -3'
miRNA:   3'- -GGGCa-------CCGCGA--CA-----UGGUGGUCGa--CGc -5'
21404 5' -59.1 NC_004812.1 + 113724 0.66 0.810971
Target:  5'- gUCCGUGGCGCgc-GCgCACaAGgUGCGc -3'
miRNA:   3'- -GGGCACCGCGacaUG-GUGgUCgACGC- -5'
21404 5' -59.1 NC_004812.1 + 47767 0.66 0.810971
Target:  5'- gCCGcGGCGCUGggGgCGUCGGCUcGCGa -3'
miRNA:   3'- gGGCaCCGCGACa-UgGUGGUCGA-CGC- -5'
21404 5' -59.1 NC_004812.1 + 118473 0.66 0.808402
Target:  5'- gCCaCGUGGCGCgugGUGaacggcaacaucccCCugCcGCUGUGu -3'
miRNA:   3'- -GG-GCACCGCGa--CAU--------------GGugGuCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 109444 0.66 0.80582
Target:  5'- gCCCGccgagggagagggcGGCGCgggGgcgcCCGCgGGCUGCGg -3'
miRNA:   3'- -GGGCa-------------CCGCGa--Cau--GGUGgUCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 124723 0.66 0.802356
Target:  5'- aCCgCGggugggaGGCGCUGgccggggggACCGCCccggcuGGCUGUGg -3'
miRNA:   3'- -GG-GCa------CCGCGACa--------UGGUGG------UCGACGC- -5'
21404 5' -59.1 NC_004812.1 + 2591 0.66 0.802356
Target:  5'- gCCCGaGGCGC-GUGCgCGCgCGGUaGCGc -3'
miRNA:   3'- -GGGCaCCGCGaCAUG-GUG-GUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 62103 0.66 0.802356
Target:  5'- cCCCGUccaccagaaccGcGCGCUG-GCC-CCGGCcGCGa -3'
miRNA:   3'- -GGGCA-----------C-CGCGACaUGGuGGUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 137385 0.66 0.802356
Target:  5'- cCCCGggggGGCGCcGUggACCACUucuccguGCUGgGu -3'
miRNA:   3'- -GGGCa---CCGCGaCA--UGGUGGu------CGACgC- -5'
21404 5' -59.1 NC_004812.1 + 28944 0.66 0.802356
Target:  5'- gCCCGgGGaCGUcGUGCC-CCAGCgcaacGCGu -3'
miRNA:   3'- -GGGCaCC-GCGaCAUGGuGGUCGa----CGC- -5'
21404 5' -59.1 NC_004812.1 + 128099 0.66 0.802356
Target:  5'- gCCCGaGGCGC-GUGCgCGCgCGGUaGCGc -3'
miRNA:   3'- -GGGCaCCGCGaCAUG-GUG-GUCGaCGC- -5'
21404 5' -59.1 NC_004812.1 + 113404 0.66 0.802356
Target:  5'- -aCGcUGGCGCUGcacgGCC-CCAGcCUGUa -3'
miRNA:   3'- ggGC-ACCGCGACa---UGGuGGUC-GACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.