miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21407 3' -55.8 NC_004812.1 + 109707 0.66 0.922217
Target:  5'- cGGCGGCGGccgCCGCgCCCgaccccGGGGcGCUg -3'
miRNA:   3'- uUUGCUGUCa--GGCG-GGGa-----UCCCuUGG- -5'
21407 3' -55.8 NC_004812.1 + 77162 0.66 0.922217
Target:  5'- --cCGGCAGcCCGCCCgcGGcGGcGCCg -3'
miRNA:   3'- uuuGCUGUCaGGCGGGgaUC-CCuUGG- -5'
21407 3' -55.8 NC_004812.1 + 72544 0.66 0.922217
Target:  5'- cGGCGaACGGgaaCCGCgCCUcgGGGGGgcGCCg -3'
miRNA:   3'- uUUGC-UGUCa--GGCGgGGA--UCCCU--UGG- -5'
21407 3' -55.8 NC_004812.1 + 32019 0.66 0.922217
Target:  5'- --nCGAacCGG-CCGCCCCccGGGGGCUc -3'
miRNA:   3'- uuuGCU--GUCaGGCGGGGauCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 65744 0.66 0.922217
Target:  5'- gAGACGGCGaUCCGCCuCCgc-GGcGCCg -3'
miRNA:   3'- -UUUGCUGUcAGGCGG-GGaucCCuUGG- -5'
21407 3' -55.8 NC_004812.1 + 49289 0.66 0.922217
Target:  5'- aAGGCGACcgcGG-CCGCCCCcccGGAACg -3'
miRNA:   3'- -UUUGCUG---UCaGGCGGGGaucCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 154432 0.66 0.922217
Target:  5'- cGACGACGacgCCGCCgCCguggAGGuGGCCg -3'
miRNA:   3'- uUUGCUGUca-GGCGG-GGa---UCCcUUGG- -5'
21407 3' -55.8 NC_004812.1 + 59500 0.66 0.922217
Target:  5'- -cGCGGCGGcgCgGCCCCcggcggacAGGGGGCg -3'
miRNA:   3'- uuUGCUGUCa-GgCGGGGa-------UCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 52103 0.66 0.922217
Target:  5'- cGACGACcGcCCGUCCCgcGGGccGAUCg -3'
miRNA:   3'- uUUGCUGuCaGGCGGGGauCCC--UUGG- -5'
21407 3' -55.8 NC_004812.1 + 96504 0.66 0.922217
Target:  5'- cAGCGGCGGaccCUGCCCC--GGGcACCc -3'
miRNA:   3'- uUUGCUGUCa--GGCGGGGauCCCuUGG- -5'
21407 3' -55.8 NC_004812.1 + 77748 0.66 0.918855
Target:  5'- gGGGCGGCc-UCCGCCCUccccgggcuccucgGGGGAcACCg -3'
miRNA:   3'- -UUUGCUGucAGGCGGGGa-------------UCCCU-UGG- -5'
21407 3' -55.8 NC_004812.1 + 117943 0.66 0.916566
Target:  5'- cGAugGACcugaccuucGUCaUGCCCCUGGGGcuguucAACCc -3'
miRNA:   3'- -UUugCUGu--------CAG-GCGGGGAUCCC------UUGG- -5'
21407 3' -55.8 NC_004812.1 + 83778 0.66 0.916566
Target:  5'- -cGCG-CGG-CCGCUCgcGGGGAGCCc -3'
miRNA:   3'- uuUGCuGUCaGGCGGGgaUCCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 101916 0.66 0.916565
Target:  5'- -cGCGGCGGUCgGgCCUcGGGGccCCg -3'
miRNA:   3'- uuUGCUGUCAGgCgGGGaUCCCuuGG- -5'
21407 3' -55.8 NC_004812.1 + 67381 0.66 0.916565
Target:  5'- uGGCGGCGcgggccUCCGCCgCCgcGcGGAGCCg -3'
miRNA:   3'- uUUGCUGUc-----AGGCGG-GGauC-CCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 103505 0.66 0.914823
Target:  5'- -cGCGACGGccgcgcggagcaucUCCugcagGUCCCUGGGGcGGCCc -3'
miRNA:   3'- uuUGCUGUC--------------AGG-----CGGGGAUCCC-UUGG- -5'
21407 3' -55.8 NC_004812.1 + 103275 0.66 0.91306
Target:  5'- gGGGCGACGG-CCGCCCCccgcacgcugacGGuGCCg -3'
miRNA:   3'- -UUUGCUGUCaGGCGGGGauc---------CCuUGG- -5'
21407 3' -55.8 NC_004812.1 + 32840 0.66 0.910675
Target:  5'- ---gGGCGcUCCGCCCgUcgGGGGGACg -3'
miRNA:   3'- uuugCUGUcAGGCGGGgA--UCCCUUGg -5'
21407 3' -55.8 NC_004812.1 + 97230 0.66 0.910675
Target:  5'- -uGCGugGGgccUCGCgCCCUGcGGGGCCg -3'
miRNA:   3'- uuUGCugUCa--GGCG-GGGAUcCCUUGG- -5'
21407 3' -55.8 NC_004812.1 + 1939 0.66 0.910675
Target:  5'- ---gGGCGcUCCGCCCgUcgGGGGGACg -3'
miRNA:   3'- uuugCUGUcAGGCGGGgA--UCCCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.