miRNA display CGI


Results 1 - 20 of 748 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21409 5' -66.3 NC_004812.1 + 46442 0.66 0.5227
Target:  5'- cCUGGGCGcUGG-CGCUGGGccaggcgcucugcguGGAcggccucagggAGGGCc -3'
miRNA:   3'- -GGCCCGC-ACCgGCGGCCC---------------CCU-----------UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 71734 0.66 0.519089
Target:  5'- gUGGGUGUGGCgggagaCGUgGGucGGGuuGGGCc -3'
miRNA:   3'- gGCCCGCACCG------GCGgCC--CCCuuCCCG- -5'
21409 5' -66.3 NC_004812.1 + 985 0.66 0.519089
Target:  5'- uCCGGG-GUcGCCGgggucCUGGGGGuccGGGGUc -3'
miRNA:   3'- -GGCCCgCAcCGGC-----GGCCCCCu--UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 80561 0.66 0.519089
Target:  5'- gCCGcGaGCGcugGGCCGCCGacguGGAGGcGGCc -3'
miRNA:   3'- -GGC-C-CGCa--CCGGCGGCcc--CCUUC-CCG- -5'
21409 5' -66.3 NC_004812.1 + 96305 0.66 0.519089
Target:  5'- gCCaGGGCaaGGCCcCCaaGGGGGGgcgcgacggcGGGGCc -3'
miRNA:   3'- -GG-CCCGcaCCGGcGG--CCCCCU----------UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 17203 0.66 0.519089
Target:  5'- cCCGGugucguucGCGgccgGuGCCGCuggagCGGGGGAcacggAGGGUg -3'
miRNA:   3'- -GGCC--------CGCa---C-CGGCG-----GCCCCCU-----UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 94338 0.66 0.519089
Target:  5'- gUGcGGCGcGGCCuGCgCGGGGc--GGGCg -3'
miRNA:   3'- gGC-CCGCaCCGG-CG-GCCCCcuuCCCG- -5'
21409 5' -66.3 NC_004812.1 + 4214 0.66 0.519089
Target:  5'- aCCGcGGCGgcgucgGGCU--CGGGGGcGGcGGCg -3'
miRNA:   3'- -GGC-CCGCa-----CCGGcgGCCCCCuUC-CCG- -5'
21409 5' -66.3 NC_004812.1 + 44721 0.66 0.519089
Target:  5'- uCCcGGCGggGGUC-CCGGGagcacGAGGGGCu -3'
miRNA:   3'- -GGcCCGCa-CCGGcGGCCCc----CUUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 156042 0.66 0.519089
Target:  5'- cCCGcGGCuccacgcGGCCgcgcgcGCCGGGGcgggaggcgGGAGGGCc -3'
miRNA:   3'- -GGC-CCGca-----CCGG------CGGCCCC---------CUUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 122989 0.66 0.519089
Target:  5'- cUCGGGgGccaugaGGCCGCCGuucguGGuGGucgAGGGGCg -3'
miRNA:   3'- -GGCCCgCa-----CCGGCGGC-----CC-CC---UUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 125141 0.66 0.519089
Target:  5'- cCCGcGGCuccacgcGGCCgcgcgcGCCGGGGcgggaggcgGGAGGGCc -3'
miRNA:   3'- -GGC-CCGca-----CCGG------CGGCCCC---------CUUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 17619 0.66 0.519089
Target:  5'- cCCGGGCGaaccgcuccGCCGUCGGuGccGGGGCu -3'
miRNA:   3'- -GGCCCGCac-------CGGCGGCCcCcuUCCCG- -5'
21409 5' -66.3 NC_004812.1 + 21010 0.66 0.519089
Target:  5'- gCCGcGCcucGGCCG-CGGGGGugcauGGGGUg -3'
miRNA:   3'- -GGCcCGca-CCGGCgGCCCCCu----UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 13002 0.66 0.518188
Target:  5'- aCGGGCGgcgcuugcuCCGUCGGGGcGAcuccggcGGGGUc -3'
miRNA:   3'- gGCCCGCacc------GGCGGCCCC-CU-------UCCCG- -5'
21409 5' -66.3 NC_004812.1 + 138399 0.66 0.518188
Target:  5'- cCCGGguggccuacuaccGCGUGGaCGCgGGGGGcugccGGCg -3'
miRNA:   3'- -GGCC-------------CGCACCgGCGgCCCCCuuc--CCG- -5'
21409 5' -66.3 NC_004812.1 + 132586 0.66 0.517287
Target:  5'- gCGGGCGUacgucacguccucggGGUCcucgaccgGCCGGGGGcggugcuggaugcGGGCg -3'
miRNA:   3'- gGCCCGCA---------------CCGG--------CGGCCCCCuu-----------CCCG- -5'
21409 5' -66.3 NC_004812.1 + 38402 0.66 0.517287
Target:  5'- -gGGGaCGgugGGCCGgagcgaaaggaGGGaGGggGGGCg -3'
miRNA:   3'- ggCCC-GCa--CCGGCgg---------CCC-CCuuCCCG- -5'
21409 5' -66.3 NC_004812.1 + 7501 0.66 0.517287
Target:  5'- -gGGGaCGgugGGCCGgagcgaaaggaGGGaGGggGGGCg -3'
miRNA:   3'- ggCCC-GCa--CCGGCgg---------CCC-CCuuCCCG- -5'
21409 5' -66.3 NC_004812.1 + 88429 0.66 0.51369
Target:  5'- uCCGGcGCGcccccgcccgcGGCCGCCGacccugccGGGGAGccacuccccgacaccGGGCc -3'
miRNA:   3'- -GGCC-CGCa----------CCGGCGGC--------CCCCUU---------------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.