miRNA display CGI


Results 1 - 20 of 600 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21410 5' -62 NC_004812.1 + 156451 0.7 0.415617
Target:  5'- -cGCgCGGCGggccgcgggcGCGGCGgCGcGGCGCCAc -3'
miRNA:   3'- gaCGaGCCGU----------UGCCGCgGC-UCGCGGU- -5'
21410 5' -62 NC_004812.1 + 156323 0.68 0.495335
Target:  5'- -gGCgCGGCcgGACGGCgGCgGAGCGCg- -3'
miRNA:   3'- gaCGaGCCG--UUGCCG-CGgCUCGCGgu -5'
21410 5' -62 NC_004812.1 + 156245 0.67 0.570551
Target:  5'- aUGCgcCGGCGGCGGCcgagagugaggguGgCGAGCGCg- -3'
miRNA:   3'- gACGa-GCCGUUGCCG-------------CgGCUCGCGgu -5'
21410 5' -62 NC_004812.1 + 156173 0.7 0.432663
Target:  5'- -gGCUC-GCGGCgGGCGCgcgcgaGAGCGCCGc -3'
miRNA:   3'- gaCGAGcCGUUG-CCGCGg-----CUCGCGGU- -5'
21410 5' -62 NC_004812.1 + 156002 0.66 0.6492
Target:  5'- gUGCUCGcggcGCGGgggaggggacgccCGGgGCCGGGgGCCGc -3'
miRNA:   3'- gACGAGC----CGUU-------------GCCgCGGCUCgCGGU- -5'
21410 5' -62 NC_004812.1 + 155890 0.76 0.171998
Target:  5'- -cGC-CGGCGACcGCGCCG-GCGCCGa -3'
miRNA:   3'- gaCGaGCCGUUGcCGCGGCuCGCGGU- -5'
21410 5' -62 NC_004812.1 + 155874 0.69 0.485201
Target:  5'- -cGCgcgCGGCGggggaggggagggGCGGgGCCG-GCGCCc -3'
miRNA:   3'- gaCGa--GCCGU-------------UGCCgCGGCuCGCGGu -5'
21410 5' -62 NC_004812.1 + 155427 0.68 0.546353
Target:  5'- -gGCggCGGCGACGGCgacggcgacgagggaGCgGGGgGCCGg -3'
miRNA:   3'- gaCGa-GCCGUUGCCG---------------CGgCUCgCGGU- -5'
21410 5' -62 NC_004812.1 + 155207 0.67 0.552132
Target:  5'- -cGCgauggCGGCGagagggggcGCGGCGCgGGGCggGCCGu -3'
miRNA:   3'- gaCGa----GCCGU---------UGCCGCGgCUCG--CGGU- -5'
21410 5' -62 NC_004812.1 + 155099 0.68 0.513999
Target:  5'- aUGCccUCGcGCGGCGGCGC-GGGCcgGCCGg -3'
miRNA:   3'- gACG--AGC-CGUUGCCGCGgCUCG--CGGU- -5'
21410 5' -62 NC_004812.1 + 154942 0.67 0.591076
Target:  5'- -gGCg-GGCcGCGGCGCCGcG-GCCAa -3'
miRNA:   3'- gaCGagCCGuUGCCGCGGCuCgCGGU- -5'
21410 5' -62 NC_004812.1 + 154822 0.67 0.561806
Target:  5'- aUGCU--GCGGCGGgGCgGAGCgGCCGg -3'
miRNA:   3'- gACGAgcCGUUGCCgCGgCUCG-CGGU- -5'
21410 5' -62 NC_004812.1 + 154723 0.66 0.63046
Target:  5'- gUGCcgCGG--GCGGgGcCCGGGCGCCc -3'
miRNA:   3'- gACGa-GCCguUGCCgC-GGCUCGCGGu -5'
21410 5' -62 NC_004812.1 + 154597 0.72 0.322514
Target:  5'- -cGC-CGGCGuCGGCGCCccGAGCGaCCGc -3'
miRNA:   3'- gaCGaGCCGUuGCCGCGG--CUCGC-GGU- -5'
21410 5' -62 NC_004812.1 + 154394 0.7 0.424089
Target:  5'- --cCUCGGCGGCGG-GCCGGGCcggggcuccaagGCCGc -3'
miRNA:   3'- gacGAGCCGUUGCCgCGGCUCG------------CGGU- -5'
21410 5' -62 NC_004812.1 + 154021 0.67 0.571525
Target:  5'- gUGCcgucggCGGCGGCGGCGUCGgaGGCGg-- -3'
miRNA:   3'- gACGa-----GCCGUUGCCGCGGC--UCGCggu -5'
21410 5' -62 NC_004812.1 + 153992 0.66 0.620595
Target:  5'- -cGcCUgGGCcGCGGCGCCaacguGCGCUAc -3'
miRNA:   3'- gaC-GAgCCGuUGCCGCGGcu---CGCGGU- -5'
21410 5' -62 NC_004812.1 + 153789 0.66 0.640326
Target:  5'- -gGC-CGGcCGACGGgccCGCCGucgcGCGCCGc -3'
miRNA:   3'- gaCGaGCC-GUUGCC---GCGGCu---CGCGGU- -5'
21410 5' -62 NC_004812.1 + 153745 0.67 0.581283
Target:  5'- gUGC-CGGCGcgcACGGCGUCcucGGCGUCGc -3'
miRNA:   3'- gACGaGCCGU---UGCCGCGGc--UCGCGGU- -5'
21410 5' -62 NC_004812.1 + 153355 0.69 0.467936
Target:  5'- -cGggCGGCGGgGGCGCgggcgccccuggCGGGCGCCGg -3'
miRNA:   3'- gaCgaGCCGUUgCCGCG------------GCUCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.