miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21411 3' -53.8 NC_004812.1 + 818 0.66 0.975663
Target:  5'- cCGGcCGGGAagcGGUGUCCGaCGCcCGgagGGc -3'
miRNA:   3'- -GCC-GCUCUa--UUACAGGC-GCGaGCa--CC- -5'
21411 3' -53.8 NC_004812.1 + 126326 0.66 0.975663
Target:  5'- cCGGcCGGGAagcGGUGUCCGaCGCcCGgagGGc -3'
miRNA:   3'- -GCC-GCUCUa--UUACAGGC-GCGaGCa--CC- -5'
21411 3' -53.8 NC_004812.1 + 50623 0.66 0.975663
Target:  5'- aGGCGAGcgAGaaGUUCGgGCU-GUGGg -3'
miRNA:   3'- gCCGCUCuaUUa-CAGGCgCGAgCACC- -5'
21411 3' -53.8 NC_004812.1 + 67295 0.66 0.975663
Target:  5'- gCGGCGGGGgcggGagCGgGCUCG-GGg -3'
miRNA:   3'- -GCCGCUCUauuaCagGCgCGAGCaCC- -5'
21411 3' -53.8 NC_004812.1 + 49167 0.66 0.973054
Target:  5'- gCGGCGAGuccgcgAcgGccgCCGCGCggccgGUGGg -3'
miRNA:   3'- -GCCGCUCua----UuaCa--GGCGCGag---CACC- -5'
21411 3' -53.8 NC_004812.1 + 111698 0.66 0.970248
Target:  5'- -uGCGAGc---UGUCCGUGCagaggcagagccUCGUGGa -3'
miRNA:   3'- gcCGCUCuauuACAGGCGCG------------AGCACC- -5'
21411 3' -53.8 NC_004812.1 + 90064 0.66 0.970248
Target:  5'- aCGGCaGAGcgGGUGuaccggcuguUCCGCGaggcCGUGGa -3'
miRNA:   3'- -GCCG-CUCuaUUAC----------AGGCGCga--GCACC- -5'
21411 3' -53.8 NC_004812.1 + 23629 0.66 0.970248
Target:  5'- gGGCGcccAGAcgGGcGUCCGCGUgacccucgcccUCGUGGc -3'
miRNA:   3'- gCCGC---UCUa-UUaCAGGCGCG-----------AGCACC- -5'
21411 3' -53.8 NC_004812.1 + 61217 0.66 0.970248
Target:  5'- gGGCGGGGgggcugggguGUGUCCG-GCg-GUGGa -3'
miRNA:   3'- gCCGCUCUau--------UACAGGCgCGagCACC- -5'
21411 3' -53.8 NC_004812.1 + 121536 0.66 0.967239
Target:  5'- gCGcGCGAGAUc--GUCgCGCGgCUgGUGGc -3'
miRNA:   3'- -GC-CGCUCUAuuaCAG-GCGC-GAgCACC- -5'
21411 3' -53.8 NC_004812.1 + 77959 0.66 0.966296
Target:  5'- uGGCGGGGgcgaagagGGUGUCCgggccggccuucgaGCGCUCcaGGa -3'
miRNA:   3'- gCCGCUCUa-------UUACAGG--------------CGCGAGcaCC- -5'
21411 3' -53.8 NC_004812.1 + 138102 0.67 0.960589
Target:  5'- uGGCGGGAUGggGucUCCG-GCUCGa-- -3'
miRNA:   3'- gCCGCUCUAUuaC--AGGCgCGAGCacc -5'
21411 3' -53.8 NC_004812.1 + 94384 0.67 0.960589
Target:  5'- gCGGCGAGAUAGggguUGUaaaaguucUCGCGCggcCGgGGg -3'
miRNA:   3'- -GCCGCUCUAUU----ACA--------GGCGCGa--GCaCC- -5'
21411 3' -53.8 NC_004812.1 + 100073 0.67 0.960589
Target:  5'- uGGCGcGGUGggGUCgGgGCUCGUc- -3'
miRNA:   3'- gCCGCuCUAUuaCAGgCgCGAGCAcc -5'
21411 3' -53.8 NC_004812.1 + 38620 0.67 0.960589
Target:  5'- gCGGCGGGG--GUcUCCGCGC-CG-GGc -3'
miRNA:   3'- -GCCGCUCUauUAcAGGCGCGaGCaCC- -5'
21411 3' -53.8 NC_004812.1 + 7719 0.67 0.960589
Target:  5'- gCGGCGGGG--GUcUCCGCGC-CG-GGc -3'
miRNA:   3'- -GCCGCUCUauUAcAGGCGCGaGCaCC- -5'
21411 3' -53.8 NC_004812.1 + 146034 0.67 0.958424
Target:  5'- aGGCGGGGgcGUGUUgggacgccagggucgCgGCGCUaCGUGGa -3'
miRNA:   3'- gCCGCUCUauUACAG---------------G-CGCGA-GCACC- -5'
21411 3' -53.8 NC_004812.1 + 48189 0.67 0.953059
Target:  5'- uCGGCGucGAgg--GUCCGCGCcaCGUGc -3'
miRNA:   3'- -GCCGCu-CUauuaCAGGCGCGa-GCACc -5'
21411 3' -53.8 NC_004812.1 + 20900 0.67 0.953059
Target:  5'- aCGGuCGGGAUGAcGcCCGuCGCguaGUGGu -3'
miRNA:   3'- -GCC-GCUCUAUUaCaGGC-GCGag-CACC- -5'
21411 3' -53.8 NC_004812.1 + 97199 0.67 0.953059
Target:  5'- uGGCGGGGcucauccuggcGGUGcCaCGCGCUgCGUGGg -3'
miRNA:   3'- gCCGCUCUa----------UUACaG-GCGCGA-GCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.