miRNA display CGI


Results 1 - 20 of 528 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21411 5' -60 NC_004812.1 + 43989 0.66 0.753159
Target:  5'- cGCCACGuCGgAGguGCAcaUGGCCGa -3'
miRNA:   3'- cUGGUGU-GCgUCguCGUcgACCGGCc -5'
21411 5' -60 NC_004812.1 + 5134 0.66 0.753159
Target:  5'- gGGCCGCcCGgGGaCGGCGGCgucGGCCc- -3'
miRNA:   3'- -CUGGUGuGCgUC-GUCGUCGa--CCGGcc -5'
21411 5' -60 NC_004812.1 + 125335 0.66 0.753159
Target:  5'- cGCCGCgggAUGCGcCGGCGGC-GGCCGa -3'
miRNA:   3'- cUGGUG---UGCGUcGUCGUCGaCCGGCc -5'
21411 5' -60 NC_004812.1 + 19623 0.66 0.753159
Target:  5'- aGCCGCGCGUccGGUcucGCGGCgacgugGGCCGc -3'
miRNA:   3'- cUGGUGUGCG--UCGu--CGUCGa-----CCGGCc -5'
21411 5' -60 NC_004812.1 + 132920 0.66 0.753159
Target:  5'- aGGCgCGCACGCAGCGGaccCcGGCCa- -3'
miRNA:   3'- -CUG-GUGUGCGUCGUCgucGaCCGGcc -5'
21411 5' -60 NC_004812.1 + 96708 0.66 0.753159
Target:  5'- cGCCGCGgggucCGCGGCGGCgauagGGCUcGCCGu -3'
miRNA:   3'- cUGGUGU-----GCGUCGUCG-----UCGAcCGGCc -5'
21411 5' -60 NC_004812.1 + 130643 0.66 0.753159
Target:  5'- gGGCCGCcCGgGGaCGGCGGCgucGGCCc- -3'
miRNA:   3'- -CUGGUGuGCgUC-GUCGUCGa--CCGGcc -5'
21411 5' -60 NC_004812.1 + 128825 0.66 0.753159
Target:  5'- cGCgGCGCGCcaGGCcucggggaagAGCGGgUGGUCGGu -3'
miRNA:   3'- cUGgUGUGCG--UCG----------UCGUCgACCGGCC- -5'
21411 5' -60 NC_004812.1 + 114669 0.66 0.753159
Target:  5'- cGCCACcggguCGCGGUccaggGGCGGCcgcgGGaCCGGa -3'
miRNA:   3'- cUGGUGu----GCGUCG-----UCGUCGa---CC-GGCC- -5'
21411 5' -60 NC_004812.1 + 21155 0.66 0.753159
Target:  5'- cGCCgGCGCGCAGCucgcggaggaGGC-GCUgGGCgCGGa -3'
miRNA:   3'- cUGG-UGUGCGUCG----------UCGuCGA-CCG-GCC- -5'
21411 5' -60 NC_004812.1 + 107223 0.66 0.753159
Target:  5'- nGCCugGgCGUcgaGGCacagGGCGGCgaGGCCGGg -3'
miRNA:   3'- cUGGugU-GCG---UCG----UCGUCGa-CCGGCC- -5'
21411 5' -60 NC_004812.1 + 156236 0.66 0.753159
Target:  5'- cGCCGCgggAUGCGcCGGCGGC-GGCCGa -3'
miRNA:   3'- cUGGUG---UGCGUcGUCGUCGaCCGGCc -5'
21411 5' -60 NC_004812.1 + 26275 0.66 0.753159
Target:  5'- cGGCCGCGCgGguGCcccGCGGCgacaggggaaGGUCGGg -3'
miRNA:   3'- -CUGGUGUG-CguCGu--CGUCGa---------CCGGCC- -5'
21411 5' -60 NC_004812.1 + 67205 0.66 0.753159
Target:  5'- uGACCGCG-GCGGCGGCGcccGCgGGCUc- -3'
miRNA:   3'- -CUGGUGUgCGUCGUCGU---CGaCCGGcc -5'
21411 5' -60 NC_004812.1 + 3317 0.66 0.753159
Target:  5'- cGCgGCGCGCcaGGCcucggggaagAGCGGgUGGUCGGu -3'
miRNA:   3'- cUGgUGUGCG--UCG----------UCGUCgACCGGCC- -5'
21411 5' -60 NC_004812.1 + 45290 0.66 0.753159
Target:  5'- cGCCGCGgGCAGacuGGC-GUUGGCgGGc -3'
miRNA:   3'- cUGGUGUgCGUCg--UCGuCGACCGgCC- -5'
21411 5' -60 NC_004812.1 + 136969 0.66 0.753159
Target:  5'- cACCACACaGgAGCuagAGCGcCUGGaCCGGg -3'
miRNA:   3'- cUGGUGUG-CgUCG---UCGUcGACC-GGCC- -5'
21411 5' -60 NC_004812.1 + 96768 0.66 0.75033
Target:  5'- cGCCGuCGCGaggaGGCGGCGgguucgcaccggccGCUGGCgGGc -3'
miRNA:   3'- cUGGU-GUGCg---UCGUCGU--------------CGACCGgCC- -5'
21411 5' -60 NC_004812.1 + 136768 0.66 0.743693
Target:  5'- gGACCGCcucugucagAUcCAGgAGCuGCUGGCCGa -3'
miRNA:   3'- -CUGGUG---------UGcGUCgUCGuCGACCGGCc -5'
21411 5' -60 NC_004812.1 + 118836 0.66 0.743693
Target:  5'- uGGCC-CACGUggaGGCGcucgcGCAGCUGGUggUGGa -3'
miRNA:   3'- -CUGGuGUGCG---UCGU-----CGUCGACCG--GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.