miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21412 5' -62.2 NC_004812.1 + 26321 0.66 0.670548
Target:  5'- cGGGGUucgcggccgcucgggGGuCCCGGGGGuggCcGGCCGAa -3'
miRNA:   3'- -CCCCG---------------CCuGGGCCCUCua-GcUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 36384 0.66 0.666646
Target:  5'- gGGGGCGaGGgucacCCaCGGGAGGagGAcGCCGGg -3'
miRNA:   3'- -CCCCGC-CU-----GG-GCCCUCUagCU-CGGUU- -5'
21412 5' -62.2 NC_004812.1 + 82152 0.66 0.666646
Target:  5'- gGGcGGUGGACgaguuCCGGGGcGcgCGGGCCc- -3'
miRNA:   3'- -CC-CCGCCUG-----GGCCCU-CuaGCUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 5483 0.66 0.666646
Target:  5'- gGGGGCGaGGgucacCCaCGGGAGGagGAcGCCGGg -3'
miRNA:   3'- -CCCCGC-CU-----GG-GCCCUCUagCU-CGGUU- -5'
21412 5' -62.2 NC_004812.1 + 122220 0.66 0.666646
Target:  5'- aGGGGCGcGAgaCGGGAGGgugUGGGCg-- -3'
miRNA:   3'- -CCCCGC-CUggGCCCUCUa--GCUCGguu -5'
21412 5' -62.2 NC_004812.1 + 114 0.66 0.656873
Target:  5'- cGGGGcCGGgagcccGCCCGGGAGcccgcccggGAGCCc- -3'
miRNA:   3'- -CCCC-GCC------UGGGCCCUCuag------CUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 125655 0.66 0.656873
Target:  5'- -cGGCGuaccuGACCCucgGGGAGGccUCGGGCCGc -3'
miRNA:   3'- ccCCGC-----CUGGG---CCCUCU--AGCUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 156524 0.66 0.656873
Target:  5'- cGGGGcCGGgagcccGCCCGGGAGcccgcccggGAGCCc- -3'
miRNA:   3'- -CCCC-GCC------UGGGCCCUCuag------CUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 73538 0.66 0.656873
Target:  5'- gGGGGCGGGCCCGcagcGAccgCGGGCa-- -3'
miRNA:   3'- -CCCCGCCUGGGCc---CUcuaGCUCGguu -5'
21412 5' -62.2 NC_004812.1 + 155574 0.66 0.656873
Target:  5'- aGGGGCGcGCgCGGGcGGcCGGGCCc- -3'
miRNA:   3'- -CCCCGCcUGgGCCCuCUaGCUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 55263 0.66 0.656873
Target:  5'- --cGCGGugUUGGGGGGcUGGGCCAGg -3'
miRNA:   3'- cccCGCCugGGCCCUCUaGCUCGGUU- -5'
21412 5' -62.2 NC_004812.1 + 31015 0.66 0.656873
Target:  5'- cGGGGcCGGgagcccGCCCGGGAGcccgcccggGAGCCc- -3'
miRNA:   3'- -CCCC-GCC------UGGGCCCUCuag------CUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 30065 0.66 0.656873
Target:  5'- aGGGGCGcGCgCGGGcGGcCGGGCCc- -3'
miRNA:   3'- -CCCCGCcUGgGCCCuCUaGCUCGGuu -5'
21412 5' -62.2 NC_004812.1 + 81679 0.66 0.656873
Target:  5'- gGGGGUGGA--CGGGGGGcagcUGGGCCAc -3'
miRNA:   3'- -CCCCGCCUggGCCCUCUa---GCUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 112057 0.66 0.656873
Target:  5'- cGGGGaGGGCCCGuccgucGAGccCGGGCCAc -3'
miRNA:   3'- -CCCCgCCUGGGCc-----CUCuaGCUCGGUu -5'
21412 5' -62.2 NC_004812.1 + 122430 0.66 0.655894
Target:  5'- -cGGUGGGCCCGGGcGGcgucuccUCGGGCg-- -3'
miRNA:   3'- ccCCGCCUGGGCCCuCU-------AGCUCGguu -5'
21412 5' -62.2 NC_004812.1 + 153331 0.66 0.655894
Target:  5'- -cGGUGGGCCCGGGcGGcgucuccUCGGGCg-- -3'
miRNA:   3'- ccCCGCCUGGGCCCuCU-------AGCUCGguu -5'
21412 5' -62.2 NC_004812.1 + 117367 0.66 0.655894
Target:  5'- uGGGGCGGccgcGCCCGGcAGcgCGGcggcggcGCCGg -3'
miRNA:   3'- -CCCCGCC----UGGGCCcUCuaGCU-------CGGUu -5'
21412 5' -62.2 NC_004812.1 + 148268 0.66 0.655894
Target:  5'- uGGGGCGGccgcGCCCGGcAGcgCGGcggcggcGCCGg -3'
miRNA:   3'- -CCCCGCC----UGGGCCcUCuaGCU-------CGGUu -5'
21412 5' -62.2 NC_004812.1 + 14554 0.66 0.652958
Target:  5'- gGGGGCGGgcucgucGCCCGGGGccuGcUCGuccucguccuccggGGCCAGc -3'
miRNA:   3'- -CCCCGCC-------UGGGCCCU---CuAGC--------------UCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.