miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21420 5' -55 NC_004812.1 + 156493 0.66 0.925265
Target:  5'- cGGGCUCCCGGgcGGgcucccggcccCGCgCGCGCCccgGCc -3'
miRNA:   3'- -UUUGAGGGCCauCU-----------GUG-GCGUGGa--UG- -5'
21420 5' -55 NC_004812.1 + 156022 0.7 0.721764
Target:  5'- gGGACgCCCGGggccGGGgGCCGCGCCgcgggACg -3'
miRNA:   3'- -UUUGaGGGCCa---UCUgUGGCGUGGa----UG- -5'
21420 5' -55 NC_004812.1 + 154314 0.66 0.91381
Target:  5'- -uGCUCgagCCGGaccccGACGCCGCGCCg-- -3'
miRNA:   3'- uuUGAG---GGCCau---CUGUGGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 154155 0.7 0.721764
Target:  5'- cGGACUUCCGccgcGGcgaggcgcacucGCACCGCGCCUGCg -3'
miRNA:   3'- -UUUGAGGGCca--UC------------UGUGGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 150914 0.67 0.901376
Target:  5'- -cGCUCgCCGG-AGAcCGCCGCGCg-GCg -3'
miRNA:   3'- uuUGAG-GGCCaUCU-GUGGCGUGgaUG- -5'
21420 5' -55 NC_004812.1 + 150309 0.67 0.873656
Target:  5'- -cGCgugCCCGG-GGGCGCCGCucccCCUGg -3'
miRNA:   3'- uuUGa--GGGCCaUCUGUGGCGu---GGAUg -5'
21420 5' -55 NC_004812.1 + 150249 0.7 0.731786
Target:  5'- -cGCgUCCCuGGcGGGCGgCGCGCCUGCc -3'
miRNA:   3'- uuUG-AGGG-CCaUCUGUgGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 148949 0.67 0.887982
Target:  5'- -cGCUCCCGGcccgcGGGC-CCGCAgCUucGCg -3'
miRNA:   3'- uuUGAGGGCCa----UCUGuGGCGUgGA--UG- -5'
21420 5' -55 NC_004812.1 + 144782 0.74 0.496819
Target:  5'- -uGCUCCCGG-GGACACCGUccacACCgACg -3'
miRNA:   3'- uuUGAGGGCCaUCUGUGGCG----UGGaUG- -5'
21420 5' -55 NC_004812.1 + 144731 0.71 0.711662
Target:  5'- cGACUgCCGGacGGACuuCUGCGCCUACc -3'
miRNA:   3'- uUUGAgGGCCa-UCUGu-GGCGUGGAUG- -5'
21420 5' -55 NC_004812.1 + 143369 0.66 0.919661
Target:  5'- --cCUCCCGGUAcgagcuGACgACCGCGCg--- -3'
miRNA:   3'- uuuGAGGGCCAU------CUG-UGGCGUGgaug -5'
21420 5' -55 NC_004812.1 + 142373 0.67 0.894798
Target:  5'- ---aUCCCGGggugGGACcUCGCACCg-- -3'
miRNA:   3'- uuugAGGGCCa---UCUGuGGCGUGGaug -5'
21420 5' -55 NC_004812.1 + 142287 0.67 0.873656
Target:  5'- gGAGCUCCUGGacgaGGGCcCCGgGCCgGCg -3'
miRNA:   3'- -UUUGAGGGCCa---UCUGuGGCgUGGaUG- -5'
21420 5' -55 NC_004812.1 + 142238 0.66 0.925265
Target:  5'- ----aCCUGGUGcGcCGCCGCGCCcGCg -3'
miRNA:   3'- uuugaGGGCCAU-CuGUGGCGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 141426 0.68 0.825522
Target:  5'- cAGCgaggCCCGGaGGGCGgCGCGCC-ACg -3'
miRNA:   3'- uUUGa---GGGCCaUCUGUgGCGUGGaUG- -5'
21420 5' -55 NC_004812.1 + 141186 0.7 0.751553
Target:  5'- cAGCUCCCGGaggcccgGGGCGgCGCGCUcgACg -3'
miRNA:   3'- uUUGAGGGCCa------UCUGUgGCGUGGa-UG- -5'
21420 5' -55 NC_004812.1 + 140409 0.66 0.919661
Target:  5'- -cGCggCCCGGguc-CGCCGCGCgCUGCu -3'
miRNA:   3'- uuUGa-GGGCCaucuGUGGCGUG-GAUG- -5'
21420 5' -55 NC_004812.1 + 138465 0.66 0.91381
Target:  5'- gGGGCUgUCGGggcgGGGCGCCGC-CCUc- -3'
miRNA:   3'- -UUUGAgGGCCa---UCUGUGGCGuGGAug -5'
21420 5' -55 NC_004812.1 + 138264 0.66 0.925265
Target:  5'- cGGCggCCgCGGUcGcGCGCCGCGcCCUGCg -3'
miRNA:   3'- uUUGa-GG-GCCAuC-UGUGGCGU-GGAUG- -5'
21420 5' -55 NC_004812.1 + 137493 0.66 0.925265
Target:  5'- gGGGCUCCUGGUcaACcCCGgCGCaCUACg -3'
miRNA:   3'- -UUUGAGGGCCAucUGuGGC-GUG-GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.