miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21427 3' -57 NC_004812.1 + 99130 0.66 0.901421
Target:  5'- gACCcgCAgGUggccgaagACGuCUCCGACggccGCCCGg -3'
miRNA:   3'- -UGGa-GUgCA--------UGCuGAGGCUGa---CGGGC- -5'
21427 3' -57 NC_004812.1 + 53840 0.66 0.895068
Target:  5'- uGCCgaaaGCGguccGCGGCguaggCCGugUGCUCGg -3'
miRNA:   3'- -UGGag--UGCa---UGCUGa----GGCugACGGGC- -5'
21427 3' -57 NC_004812.1 + 93597 0.66 0.895068
Target:  5'- cGCgCUCGCGgacgcgGCGGC-CCGcGCUuccGCCCGg -3'
miRNA:   3'- -UG-GAGUGCa-----UGCUGaGGC-UGA---CGGGC- -5'
21427 3' -57 NC_004812.1 + 131554 0.66 0.89442
Target:  5'- -gCUCGCGUGgGACUCgGGCgagcuggUGCaCCGc -3'
miRNA:   3'- ugGAGUGCAUgCUGAGgCUG-------ACG-GGC- -5'
21427 3' -57 NC_004812.1 + 16129 0.66 0.890489
Target:  5'- gACCUgGCGacgcagcUGCGcgaccgggacaucgaGCUCCGGCgcGCCCGa -3'
miRNA:   3'- -UGGAgUGC-------AUGC---------------UGAGGCUGa-CGGGC- -5'
21427 3' -57 NC_004812.1 + 156510 0.66 0.888493
Target:  5'- gGCCggggCGCGcGCGGggCCGGgaGCCCGc -3'
miRNA:   3'- -UGGa---GUGCaUGCUgaGGCUgaCGGGC- -5'
21427 3' -57 NC_004812.1 + 100 0.66 0.888493
Target:  5'- gGCCggggCGCGcGCGGggCCGGgaGCCCGc -3'
miRNA:   3'- -UGGa---GUGCaUGCUgaGGCUgaCGGGC- -5'
21427 3' -57 NC_004812.1 + 31001 0.66 0.888493
Target:  5'- gGCCggggCGCGcGCGGggCCGGgaGCCCGc -3'
miRNA:   3'- -UGGa---GUGCaUGCUgaGGCUgaCGGGC- -5'
21427 3' -57 NC_004812.1 + 150700 0.66 0.888493
Target:  5'- gGCgUCGCG-GCGGCUCCGcCcGCCgGc -3'
miRNA:   3'- -UGgAGUGCaUGCUGAGGCuGaCGGgC- -5'
21427 3' -57 NC_004812.1 + 25192 0.66 0.888493
Target:  5'- gGCgUCGCG-GCGGCUCCGcCcGCCgGc -3'
miRNA:   3'- -UGgAGUGCaUGCUGAGGCuGaCGGgC- -5'
21427 3' -57 NC_004812.1 + 73217 0.66 0.887823
Target:  5'- uCCUCGCGgccgcccUGCGGgUCgGGCgggcgGCCCGc -3'
miRNA:   3'- uGGAGUGC-------AUGCUgAGgCUGa----CGGGC- -5'
21427 3' -57 NC_004812.1 + 29594 0.66 0.88239
Target:  5'- cCCUCGCGcgGCGGCgcgggCCGGCcggcgcuccgccgccGCCCGc -3'
miRNA:   3'- uGGAGUGCa-UGCUGa----GGCUGa--------------CGGGC- -5'
21427 3' -57 NC_004812.1 + 155102 0.66 0.88239
Target:  5'- cCCUCGCGcgGCGGCgcgggCCGGCcggcgcuccgccgccGCCCGc -3'
miRNA:   3'- uGGAGUGCa-UGCUGa----GGCUGa--------------CGGGC- -5'
21427 3' -57 NC_004812.1 + 14401 0.66 0.881701
Target:  5'- gGCCagCACG-ACGACgCCGGCggccaGCCCc -3'
miRNA:   3'- -UGGa-GUGCaUGCUGaGGCUGa----CGGGc -5'
21427 3' -57 NC_004812.1 + 49830 0.66 0.874694
Target:  5'- cCCUCcCGcGCGccccGCUCCGACgccGCCCc -3'
miRNA:   3'- uGGAGuGCaUGC----UGAGGCUGa--CGGGc -5'
21427 3' -57 NC_004812.1 + 15973 0.66 0.874694
Target:  5'- cGCCcCGCGgccgGCGGCgCCGACcccgcgGCCCc -3'
miRNA:   3'- -UGGaGUGCa---UGCUGaGGCUGa-----CGGGc -5'
21427 3' -57 NC_004812.1 + 43837 0.66 0.874694
Target:  5'- cGCCgCGCGgcucGCGGCgCCGAC-GUCCGg -3'
miRNA:   3'- -UGGaGUGCa---UGCUGaGGCUGaCGGGC- -5'
21427 3' -57 NC_004812.1 + 73331 0.67 0.87039
Target:  5'- cGCCUggaucCGCGUGCGGCgagcggcgccccggCCGACgccucGCCCc -3'
miRNA:   3'- -UGGA-----GUGCAUGCUGa-------------GGCUGa----CGGGc -5'
21427 3' -57 NC_004812.1 + 75723 0.67 0.867478
Target:  5'- aGCCgCGCcaGCGGCUCCGugUccaCCCGg -3'
miRNA:   3'- -UGGaGUGcaUGCUGAGGCugAc--GGGC- -5'
21427 3' -57 NC_004812.1 + 110309 0.67 0.867478
Target:  5'- cGCCcgCGCGgcccgccGCGGcCUCCGGCcGCCCc -3'
miRNA:   3'- -UGGa-GUGCa------UGCU-GAGGCUGaCGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.