miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 3' -61 NC_004812.1 + 113183 0.66 0.733089
Target:  5'- cCGCCG-GCgagauaaugucCGCGCUCGuGGUCGaCUCc -3'
miRNA:   3'- -GCGGCgCGa----------GCGCGAGC-UCAGC-GAGu -5'
21439 3' -61 NC_004812.1 + 101199 0.66 0.733089
Target:  5'- -aCCGCGC-CGCGC-CGGGggUGUUCGa -3'
miRNA:   3'- gcGGCGCGaGCGCGaGCUCa-GCGAGU- -5'
21439 3' -61 NC_004812.1 + 48668 0.66 0.733089
Target:  5'- uCGCCGCGCgauggccgGCcucCUCGGGgCGCUCu -3'
miRNA:   3'- -GCGGCGCGag------CGc--GAGCUCaGCGAGu -5'
21439 3' -61 NC_004812.1 + 55638 0.66 0.733089
Target:  5'- cCGCCgGCGCUCGCGgaCGuc-CGCg-- -3'
miRNA:   3'- -GCGG-CGCGAGCGCgaGCucaGCGagu -5'
21439 3' -61 NC_004812.1 + 97379 0.66 0.733089
Target:  5'- uCGCCGCGgUCGCGggCGuGggCGCg-- -3'
miRNA:   3'- -GCGGCGCgAGCGCgaGCuCa-GCGagu -5'
21439 3' -61 NC_004812.1 + 73338 0.66 0.733089
Target:  5'- gCGCCGCGCUCGgaaggcacaUGCgacCGAGcaCGCUa- -3'
miRNA:   3'- -GCGGCGCGAGC---------GCGa--GCUCa-GCGAgu -5'
21439 3' -61 NC_004812.1 + 94152 0.66 0.733089
Target:  5'- cCGCCGCGCUgGgGUUCGuGg-GUUCc -3'
miRNA:   3'- -GCGGCGCGAgCgCGAGCuCagCGAGu -5'
21439 3' -61 NC_004812.1 + 47486 0.66 0.733089
Target:  5'- cCGCCGgGUcCGgGuCUCGGGUCG-UCAc -3'
miRNA:   3'- -GCGGCgCGaGCgC-GAGCUCAGCgAGU- -5'
21439 3' -61 NC_004812.1 + 140389 0.66 0.730254
Target:  5'- aCGCCGCGCUCGC-CaCGGacaccacccccaccGUCGC-CGc -3'
miRNA:   3'- -GCGGCGCGAGCGcGaGCU--------------CAGCGaGU- -5'
21439 3' -61 NC_004812.1 + 128063 0.66 0.723614
Target:  5'- uCGCgGCGCcCGaGgUCGGGcCGCUCGc -3'
miRNA:   3'- -GCGgCGCGaGCgCgAGCUCaGCGAGU- -5'
21439 3' -61 NC_004812.1 + 111410 0.66 0.723614
Target:  5'- gGCCGCGCUgcUGCGCUCccgggccuGGGUgaCGCa-- -3'
miRNA:   3'- gCGGCGCGA--GCGCGAG--------CUCA--GCGagu -5'
21439 3' -61 NC_004812.1 + 25913 0.66 0.723614
Target:  5'- gCGCCGCGggCGCGCgucgCGAGagcCGgaCGa -3'
miRNA:   3'- -GCGGCGCgaGCGCGa---GCUCa--GCgaGU- -5'
21439 3' -61 NC_004812.1 + 87505 0.66 0.723614
Target:  5'- gGCCGCgacaGCUCGUgGCUgGAGaUGUUCAc -3'
miRNA:   3'- gCGGCG----CGAGCG-CGAgCUCaGCGAGU- -5'
21439 3' -61 NC_004812.1 + 106398 0.66 0.723614
Target:  5'- aGUCGCucCUCGCGCgacagCGGGgggccgcggCGCUCGa -3'
miRNA:   3'- gCGGCGc-GAGCGCGa----GCUCa--------GCGAGU- -5'
21439 3' -61 NC_004812.1 + 109710 0.66 0.723614
Target:  5'- cCGCCGCGCUggcggcCGCGCUgGGcaggCGCg-- -3'
miRNA:   3'- -GCGGCGCGA------GCGCGAgCUca--GCGagu -5'
21439 3' -61 NC_004812.1 + 85386 0.66 0.723614
Target:  5'- cCGCCGCGCccUCGCGgC-CGcc-CGCUCGc -3'
miRNA:   3'- -GCGGCGCG--AGCGC-GaGCucaGCGAGU- -5'
21439 3' -61 NC_004812.1 + 12138 0.66 0.723614
Target:  5'- gGgCGCGCg-GCGC-CGGGccCGCUCAa -3'
miRNA:   3'- gCgGCGCGagCGCGaGCUCa-GCGAGU- -5'
21439 3' -61 NC_004812.1 + 27360 0.66 0.714066
Target:  5'- gCGCCGCuGCUgGCGCgCGgcccgcgccaGGUgCGCUCc -3'
miRNA:   3'- -GCGGCG-CGAgCGCGaGC----------UCA-GCGAGu -5'
21439 3' -61 NC_004812.1 + 83207 0.66 0.714066
Target:  5'- gCGCgGCgGC-CGCGCUCGGGggC-CUCGg -3'
miRNA:   3'- -GCGgCG-CGaGCGCGAGCUCa-GcGAGU- -5'
21439 3' -61 NC_004812.1 + 25101 0.66 0.714066
Target:  5'- cCGCCGCGCgccgacgCGCGUUcCGGGgCGUg-- -3'
miRNA:   3'- -GCGGCGCGa------GCGCGA-GCUCaGCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.