miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 156557 0.66 0.891641
Target:  5'- -gUGGCGccgcGCCGCCGcgcccGCGGcccGCcgCGCg -3'
miRNA:   3'- aaACUGCu---CGGCGGC-----UGCC---UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 156455 0.78 0.292928
Target:  5'- --cGGCGGGCCGCgGGCGcGGCggCGCg -3'
miRNA:   3'- aaaCUGCUCGGCGgCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 156228 0.67 0.870607
Target:  5'- --gGGCGGGgCGCCG-CGGGaugCGCc -3'
miRNA:   3'- aaaCUGCUCgGCGGCuGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 156155 0.67 0.870607
Target:  5'- --aGGCGcGCCGgCGGCccGGGC-UCGCg -3'
miRNA:   3'- aaaCUGCuCGGCgGCUG--CCUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 156135 0.75 0.444048
Target:  5'- -gUGACGGGCCGC--GCGGACGcggggCGCg -3'
miRNA:   3'- aaACUGCUCGGCGgcUGCCUGUa----GCG- -5'
21439 5' -56 NC_004812.1 + 156032 0.7 0.701014
Target:  5'- --gGGCcggGGGCCGCgCcgcgggacgGGCGGGCGUCGCg -3'
miRNA:   3'- aaaCUG---CUCGGCG-G---------CUGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 155677 0.69 0.769161
Target:  5'- --aGcCGGGagCGCCGGCGGGCucggCGCg -3'
miRNA:   3'- aaaCuGCUCg-GCGGCUGCCUGua--GCG- -5'
21439 5' -56 NC_004812.1 + 155277 0.67 0.870607
Target:  5'- --cGGCGGaCCGCCcGCGGACcgccCGCg -3'
miRNA:   3'- aaaCUGCUcGGCGGcUGCCUGua--GCG- -5'
21439 5' -56 NC_004812.1 + 155237 0.68 0.831384
Target:  5'- --gGGCGGGCCGUCGcgcACGG-CGUuUGCa -3'
miRNA:   3'- aaaCUGCUCGGCGGC---UGCCuGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 155157 0.67 0.870607
Target:  5'- --cGGCGucGCCGCCGugccCGGcCcUCGCg -3'
miRNA:   3'- aaaCUGCu-CGGCGGCu---GCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 154974 0.67 0.877838
Target:  5'- --gGGCGGGCCGCgCG--GGACccgCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG-GCugCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 154616 0.66 0.916509
Target:  5'- ---aGCGA-CCGCCGGCGGGaccCGCc -3'
miRNA:   3'- aaacUGCUcGGCGGCUGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 154507 0.72 0.630027
Target:  5'- --gGGCGGGCgGgCGGCGGAgGUcCGCu -3'
miRNA:   3'- aaaCUGCUCGgCgGCUGCCUgUA-GCG- -5'
21439 5' -56 NC_004812.1 + 154435 0.69 0.769161
Target:  5'- --cGACGAcGCCGCCGccgUGGAgGUgGCc -3'
miRNA:   3'- aaaCUGCU-CGGCGGCu--GCCUgUAgCG- -5'
21439 5' -56 NC_004812.1 + 153781 0.72 0.609637
Target:  5'- --cGAgGAgugGCCgGCCGACGGGCccgccGUCGCg -3'
miRNA:   3'- aaaCUgCU---CGG-CGGCUGCCUG-----UAGCG- -5'
21439 5' -56 NC_004812.1 + 153629 0.72 0.619827
Target:  5'- -gUGACGGGCCgGCCcaugcgGGCGGGCGgggagagggCGCg -3'
miRNA:   3'- aaACUGCUCGG-CGG------CUGCCUGUa--------GCG- -5'
21439 5' -56 NC_004812.1 + 153439 0.67 0.863164
Target:  5'- --gGAUGcgccaGGUCGCCGACcccgaGGACGUgCGCg -3'
miRNA:   3'- aaaCUGC-----UCGGCGGCUG-----CCUGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 153194 0.68 0.830551
Target:  5'- --cGGCGccggagGGCCGCCGgggggagGCGGGCggcgaGUCGCc -3'
miRNA:   3'- aaaCUGC------UCGGCGGC-------UGCCUG-----UAGCG- -5'
21439 5' -56 NC_004812.1 + 153104 0.66 0.910642
Target:  5'- -----gGGGCCGCCGGCcccGGGCccgCGCc -3'
miRNA:   3'- aaacugCUCGGCGGCUG---CCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 152646 0.67 0.877838
Target:  5'- --cGGCGAccugGCCGCCGugccCGGGCuggcggccgCGCg -3'
miRNA:   3'- aaaCUGCU----CGGCGGCu---GCCUGua-------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.