miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21452 5' -56.4 NC_004812.1 + 156028 0.66 0.891689
Target:  5'- cCCGGGGCcggggGCCgCgccGCGGGACggGCg -3'
miRNA:   3'- -GGUCCUGua---UGGgGa--CGUCCUGgaCG- -5'
21452 5' -56.4 NC_004812.1 + 155765 0.67 0.85341
Target:  5'- cCCAGGACcccaggACCCCcgGCcaccccggacccccAGGACCcccgGCc -3'
miRNA:   3'- -GGUCCUGua----UGGGGa-CG--------------UCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 155704 0.7 0.681988
Target:  5'- cCCAGGACccccggcgACCCCggaccccCAGGACCcccgGCg -3'
miRNA:   3'- -GGUCCUGua------UGGGGac-----GUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 155653 0.71 0.64151
Target:  5'- cCCAGGACccccggcgACCCCggaccccCAGGACCccgGCg -3'
miRNA:   3'- -GGUCCUGua------UGGGGac-----GUCCUGGa--CG- -5'
21452 5' -56.4 NC_004812.1 + 155610 0.66 0.891689
Target:  5'- -gGGGGCG-ACCCCggaccccCAGGACCcccgGCg -3'
miRNA:   3'- ggUCCUGUaUGGGGac-----GUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 155602 0.67 0.847921
Target:  5'- gCgGGGGCGcgGCCCCggccggGCAGG-CCUaGUg -3'
miRNA:   3'- -GgUCCUGUa-UGGGGa-----CGUCCuGGA-CG- -5'
21452 5' -56.4 NC_004812.1 + 155389 0.69 0.769824
Target:  5'- gCCAGGA---ACCCCggggGCcGGGCCggGCc -3'
miRNA:   3'- -GGUCCUguaUGGGGa---CGuCCUGGa-CG- -5'
21452 5' -56.4 NC_004812.1 + 155091 0.66 0.884929
Target:  5'- gCGGcGGCAUGCCCUcGCGcggcggcgcGGGCCgGCc -3'
miRNA:   3'- gGUC-CUGUAUGGGGaCGU---------CCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 154968 0.68 0.797251
Target:  5'- -gGGGACGggcggGCCgC-GCGGGACCcGCg -3'
miRNA:   3'- ggUCCUGUa----UGGgGaCGUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 154922 0.71 0.671908
Target:  5'- aUAGGGCAUcCCCCgccGCGGGcggGCCgcgGCg -3'
miRNA:   3'- gGUCCUGUAuGGGGa--CGUCC---UGGa--CG- -5'
21452 5' -56.4 NC_004812.1 + 153665 0.82 0.173315
Target:  5'- gCAGGGCGUGCUCCUGCucuccacgcGGACCUGg -3'
miRNA:   3'- gGUCCUGUAUGGGGACGu--------CCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 153581 0.66 0.884929
Target:  5'- gCuGGGCAaccGCCUCUGCGGGcccgacacggccGCCUGg -3'
miRNA:   3'- gGuCCUGUa--UGGGGACGUCC------------UGGACg -5'
21452 5' -56.4 NC_004812.1 + 153445 0.7 0.721815
Target:  5'- gCCAGGucGCcgACCCCg--AGGACgUGCg -3'
miRNA:   3'- -GGUCC--UGuaUGGGGacgUCCUGgACG- -5'
21452 5' -56.4 NC_004812.1 + 153162 0.69 0.769824
Target:  5'- gCCGGGcCcgACCCCcGCGGcGGCUgGCg -3'
miRNA:   3'- -GGUCCuGuaUGGGGaCGUC-CUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 152997 0.73 0.55072
Target:  5'- gCCGGGGCGgGCCUggGuCAGGGCCUGg -3'
miRNA:   3'- -GGUCCUGUaUGGGgaC-GUCCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 152942 0.69 0.75092
Target:  5'- gCGGGACuuggGCgCCggGCGGGACUUGg -3'
miRNA:   3'- gGUCCUGua--UGgGGa-CGUCCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 152906 0.69 0.75092
Target:  5'- gCGGGACuuggGCgCCggGCGGGACUUGg -3'
miRNA:   3'- gGUCCUGua--UGgGGa-CGUCCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 152782 0.66 0.910609
Target:  5'- -aGGGGCGggGCCUgggGCGGGGCCgcagGCc -3'
miRNA:   3'- ggUCCUGUa-UGGGga-CGUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 152768 0.66 0.910609
Target:  5'- gCuGGugcuCAUGCgCCUGCgcgGGGACCUccGCg -3'
miRNA:   3'- gGuCCu---GUAUGgGGACG---UCCUGGA--CG- -5'
21452 5' -56.4 NC_004812.1 + 152512 0.66 0.884929
Target:  5'- gCCGGGGaggacgGCCCC-GcCGGGGCC-GCg -3'
miRNA:   3'- -GGUCCUgua---UGGGGaC-GUCCUGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.