miRNA display CGI

Results 1 - 20 of 1308 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21461	5'	-69.2	NC_004812.1	+	84560	0.98	0.001844
	Target:  5'- cCCCAGCGCCCCCGaC-CCCCCGCCCCCc -3' miRNA:   3'- -GGGUCGCGGGGGC-GuGGGGGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	34832	0.84	0.018599
	Target:  5'- gCCCaAGCgGCCCUCGCuGCCCCCGCCuCCCg -3' miRNA:   3'- -GGG-UCG-CGGGGGCG-UGGGGGCGG-GGG- -5'
21461	5'	-69.2	NC_004812.1	+	18596	0.84	0.020046
	Target:  5'- cCCCuuuuguauacggGGCGCCCCCGCuCCCCCcCCCCCc -3' miRNA:   3'- -GGG------------UCGCGGGGGCGuGGGGGcGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	107016	0.66	0.399855
	Target:  5'- gCCGauGCGCgCCUGCugCgCCagcaGCCCCa -3' miRNA:   3'- gGGU--CGCGgGGGCGugG-GGg---CGGGGg -5'
21461	5'	-69.2	NC_004812.1	+	34141	0.93	0.004451
	Target:  5'- aCCCGGCGCCcgccaggggcgCCCGCGCCCCCGCCgCCCg -3' miRNA:   3'- -GGGUCGCGG-----------GGGCGUGGGGGCGG-GGG- -5'
21461	5'	-69.2	NC_004812.1	+	150884	0.9	0.007546
	Target:  5'- gCCCGGCGCCcuccuCCCGCggcagACCCCCGCCCCCc -3' miRNA:   3'- -GGGUCGCGG-----GGGCG-----UGGGGGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	680	0.88	0.010457
	Target:  5'- cCCCGGCGCUCCCGCGgCCCgGCCUCCu -3' miRNA:   3'- -GGGUCGCGGGGGCGUgGGGgCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	34331	0.87	0.011532
	Target:  5'- cUCCGGCGCCgCCGCGCCCCCcgugguccccgugGCCCCCc -3' miRNA:   3'- -GGGUCGCGGgGGCGUGGGGG-------------CGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	148929	0.86	0.014851
	Target:  5'- cCCCcGCGCCCgCC-CACCCCCGCUCCCg -3' miRNA:   3'- -GGGuCGCGGG-GGcGUGGGGGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	31281	0.85	0.017692
	Target:  5'- gCCGGCGCaUCCCGCgGCgCCCCGCCCCCc -3' miRNA:   3'- gGGUCGCG-GGGGCG-UG-GGGGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	34057	0.85	0.016009
	Target:  5'- cCCCuccGCcccCCCCCGCGcCCCCCGCCCCCg -3' miRNA:   3'- -GGGu--CGc--GGGGGCGU-GGGGGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	55033	0.86	0.014851
	Target:  5'- aCCCGGCGUgCCUGUACCCgUGCCCCCa -3' miRNA:   3'- -GGGUCGCGgGGGCGUGGGgGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	113550	0.94	0.003639
	Target:  5'- cCCCAcCGCCCCCGCACCCCCaccGCCCCCg -3' miRNA:   3'- -GGGUcGCGGGGGCGUGGGGG---CGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	57888	0.85	0.01683
	Target:  5'- cCCCcGCGCgagaacgaCCCCGCGCCgCCGCCCCCg -3' miRNA:   3'- -GGGuCGCG--------GGGGCGUGGgGGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	113584	0.94	0.003639
	Target:  5'- cCCCAcCGCCCCCGCACCCCCaccGCCCCCg -3' miRNA:   3'- -GGGUcGCGGGGGCGUGGGGG---CGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	34245	0.86	0.014126
	Target:  5'- gCCGcCGCgCCCCGCGCCCCgGCCCCCg -3' miRNA:   3'- gGGUcGCG-GGGGCGUGGGGgCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	58168	0.85	0.017256
	Target:  5'- --gGGCGCCCCCGCGCCUgCCGCCCCg -3' miRNA:   3'- gggUCGCGGGGGCGUGGG-GGCGGGGg -5'
21461	5'	-69.2	NC_004812.1	+	150716	0.84	0.019069
	Target:  5'- gCCCGGCgGCCccugagCCCGCGCCCgCGCCCCCc -3' miRNA:   3'- -GGGUCG-CGG------GGGCGUGGGgGCGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	113618	0.93	0.00434
	Target:  5'- cCCCAcCGCCCCCGCACCCCC-CCCCCa -3' miRNA:   3'- -GGGUcGCGGGGGCGUGGGGGcGGGGG- -5'
21461	5'	-69.2	NC_004812.1	+	77613	0.89	0.008773
	Target:  5'- cCCCGGCGCaCCCCcgacccccggcGCACCCCCGaCCCCCg -3' miRNA:   3'- -GGGUCGCG-GGGG-----------CGUGGGGGC-GGGGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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