miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 5' -57.9 NC_004812.1 + 105172 0.66 0.827017
Target:  5'- gGGgUCgCGUgcgGCUGGUGGCgGGGCg -3'
miRNA:   3'- -CUgAG-GCAagaCGACCGCCGgUUCGa -5'
21476 5' -57.9 NC_004812.1 + 42832 0.66 0.818495
Target:  5'- -uCUCCGUcgUCUGgcgcUUGGCgccgucGGCCAGGCg -3'
miRNA:   3'- cuGAGGCA--AGAC----GACCG------CCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 75435 0.66 0.809804
Target:  5'- aGCUCCGcc--GC-GGCGGCCGGGUc -3'
miRNA:   3'- cUGAGGCaagaCGaCCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 46436 0.66 0.809804
Target:  5'- cGCUCCccuGggC-GCUGGCgcugGGCCAGGCg -3'
miRNA:   3'- cUGAGG---CaaGaCGACCG----CCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 15937 0.66 0.809804
Target:  5'- cGACcCCGccCUGCcgGGCuucGGCCGGGCg -3'
miRNA:   3'- -CUGaGGCaaGACGa-CCG---CCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 27350 0.66 0.809804
Target:  5'- cGGCgccgCCGcgccgCUGCUGGCGcgcggcccgcGCCAGGUg -3'
miRNA:   3'- -CUGa---GGCaa---GACGACCGC----------CGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 79693 0.66 0.809804
Target:  5'- cGACUUCGgggggCUGCgGGUGGCCcccGCc -3'
miRNA:   3'- -CUGAGGCaa---GACGaCCGCCGGuu-CGa -5'
21476 5' -57.9 NC_004812.1 + 152858 0.66 0.809804
Target:  5'- cGGCgccgCCGcgccgCUGCUGGCGcgcggcccgcGCCAGGUg -3'
miRNA:   3'- -CUGa---GGCaa---GACGACCGC----------CGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 100028 0.66 0.809804
Target:  5'- ---aUCGUcgCUGCaUGGCGGCCGcGCg -3'
miRNA:   3'- cugaGGCAa-GACG-ACCGCCGGUuCGa -5'
21476 5' -57.9 NC_004812.1 + 132250 0.66 0.809804
Target:  5'- cGCUCCGcgUCUucGCUGGgGGCgAGGgUg -3'
miRNA:   3'- cUGAGGCa-AGA--CGACCgCCGgUUCgA- -5'
21476 5' -57.9 NC_004812.1 + 109705 0.66 0.800952
Target:  5'- cACcgCCGccgcGCUGGCGGCCGcGCUg -3'
miRNA:   3'- cUGa-GGCaagaCGACCGCCGGUuCGA- -5'
21476 5' -57.9 NC_004812.1 + 35422 0.66 0.800952
Target:  5'- cGACcagggCGcgCUGCUgGGCGGCCGcAGCUu -3'
miRNA:   3'- -CUGag---GCaaGACGA-CCGCCGGU-UCGA- -5'
21476 5' -57.9 NC_004812.1 + 4521 0.66 0.800952
Target:  5'- cGACcagggCGcgCUGCUgGGCGGCCGcAGCUu -3'
miRNA:   3'- -CUGag---GCaaGACGA-CCGCCGGU-UCGA- -5'
21476 5' -57.9 NC_004812.1 + 48861 0.66 0.791947
Target:  5'- cGGCUCCccaagacgcaGUUCgcgGCcgcgGGCGGCCGcuacAGCg -3'
miRNA:   3'- -CUGAGG----------CAAGa--CGa---CCGCCGGU----UCGa -5'
21476 5' -57.9 NC_004812.1 + 135210 0.66 0.791947
Target:  5'- -uCUCCGUcuccucgucgUCUGUguUGG-GGCCGGGCg -3'
miRNA:   3'- cuGAGGCA----------AGACG--ACCgCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 63843 0.66 0.791947
Target:  5'- gGACUCg---CUGCUGGUGGgCCA-GCUc -3'
miRNA:   3'- -CUGAGgcaaGACGACCGCC-GGUuCGA- -5'
21476 5' -57.9 NC_004812.1 + 19809 0.67 0.773516
Target:  5'- cGGCUCCucgCUGCUGcGCaucucGGCCAgcAGCUc -3'
miRNA:   3'- -CUGAGGcaaGACGAC-CG-----CCGGU--UCGA- -5'
21476 5' -57.9 NC_004812.1 + 140416 0.67 0.773516
Target:  5'- cGGgUCCGccgcgcgCUGCUGGCGaUCGAGCg -3'
miRNA:   3'- -CUgAGGCaa-----GACGACCGCcGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 100558 0.67 0.769767
Target:  5'- aGCUCCGgcacgagacgGCggUGGCGGCCGucgAGCUg -3'
miRNA:   3'- cUGAGGCaaga------CG--ACCGCCGGU---UCGA- -5'
21476 5' -57.9 NC_004812.1 + 107681 0.67 0.764107
Target:  5'- cGGCgCCaagCUGgUGGCgGGCCAGGCg -3'
miRNA:   3'- -CUGaGGcaaGACgACCG-CCGGUUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.