miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 5' -57.8 NC_004812.1 + 72333 1.08 0.002216
Target:  5'- gGGGAUGUCGGGACUCGCCGGCCUAUAa -3'
miRNA:   3'- -CCCUACAGCCCUGAGCGGCCGGAUAU- -5'
21479 5' -57.8 NC_004812.1 + 36295 0.67 0.796715
Target:  5'- aGGGggGUCGGGGuCUCccagggacgcgGCgGGCCg--- -3'
miRNA:   3'- -CCCuaCAGCCCU-GAG-----------CGgCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 2140 0.67 0.810724
Target:  5'- gGGGAggccccgcgggCGGGGCUCGCggcggCGGCCa--- -3'
miRNA:   3'- -CCCUaca--------GCCCUGAGCG-----GCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 156227 0.66 0.862432
Target:  5'- gGGGcgGggcgccgCGGGAUgCGCCGGCg---- -3'
miRNA:   3'- -CCCuaCa------GCCCUGaGCGGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 1990 0.69 0.682315
Target:  5'- aGGGGUGgCGGGuCcCGCCGGCg---- -3'
miRNA:   3'- -CCCUACaGCCCuGaGCGGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 76977 0.69 0.692276
Target:  5'- cGGGc---CGGGGC-CGCCGGCCa--- -3'
miRNA:   3'- -CCCuacaGCCCUGaGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 152943 0.69 0.712043
Target:  5'- cGGGAcuUGggcgccgggCGGGACUugggCGCCGGgCCUGg- -3'
miRNA:   3'- -CCCU--ACa--------GCCCUGA----GCGGCC-GGAUau -5'
21479 5' -57.8 NC_004812.1 + 61843 0.68 0.721832
Target:  5'- cGGGUGgacgCGGGcgaACUCGgCGGCCa--- -3'
miRNA:   3'- cCCUACa---GCCC---UGAGCgGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 100078 0.68 0.731546
Target:  5'- cGGuGggGUCGGGGCUCGUCGuCCc--- -3'
miRNA:   3'- -CC-CuaCAGCCCUGAGCGGCcGGauau -5'
21479 5' -57.8 NC_004812.1 + 68577 0.67 0.78777
Target:  5'- cGGGAca--GGGACagGCCGGCCc--- -3'
miRNA:   3'- -CCCUacagCCCUGagCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 105811 0.68 0.760153
Target:  5'- uGGGG-GUgGGGGCUCcgGCCGGCg---- -3'
miRNA:   3'- -CCCUaCAgCCCUGAG--CGGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 80540 0.68 0.721832
Target:  5'- cGGAc--CGGGACgcccgCGCCGGCCg--- -3'
miRNA:   3'- cCCUacaGCCCUGa----GCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 35558 0.77 0.290655
Target:  5'- cGGGGa---GGGGCUCGCCGGCCg--- -3'
miRNA:   3'- -CCCUacagCCCUGAGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 140626 0.67 0.76948
Target:  5'- cGGGGccgcgggGUCGGcGC-CGCCGGCCg--- -3'
miRNA:   3'- -CCCUa------CAGCCcUGaGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 30222 0.71 0.543186
Target:  5'- gGGGGUGgggggcgcgcgcgggCGGGGCUCGC-GGCCg--- -3'
miRNA:   3'- -CCCUACa--------------GCCCUGAGCGgCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 133906 0.68 0.721832
Target:  5'- cGGucgcggCGGGgccucuACUCGCCGGCCUGc- -3'
miRNA:   3'- cCCuaca--GCCC------UGAGCGGCCGGAUau -5'
21479 5' -57.8 NC_004812.1 + 25393 0.67 0.778689
Target:  5'- gGGGAgGUCGGcGcGCUCGCCGGagaCCg--- -3'
miRNA:   3'- -CCCUaCAGCC-C-UGAGCGGCC---GGauau -5'
21479 5' -57.8 NC_004812.1 + 5397 0.67 0.796715
Target:  5'- cGGGGccg-GGGGCgUCGCCGGCCc--- -3'
miRNA:   3'- -CCCUacagCCCUG-AGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 64206 0.71 0.552036
Target:  5'- gGGGGUGUCGGG-CggcCCGGCCg--- -3'
miRNA:   3'- -CCCUACAGCCCuGagcGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 91094 0.69 0.692276
Target:  5'- uGGcc-UC-GGACUCGCCGGCCUGc- -3'
miRNA:   3'- cCCuacAGcCCUGAGCGGCCGGAUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.