Results 1 - 20 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21482 | 3' | -56.2 | NC_004812.1 | + | 70625 | 1.11 | 0.002333 |
Target: 5'- cCACACCUCCCCUUUCCAGCGUUCCCCc -3' miRNA: 3'- -GUGUGGAGGGGAAAGGUCGCAAGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 71663 | 0.71 | 0.653824 |
Target: 5'- cCACGCCUCCCCcagccacucgacCCGGCGg--CCCg -3' miRNA: 3'- -GUGUGGAGGGGaaa---------GGUCGCaagGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 5754 | 0.71 | 0.680127 |
Target: 5'- aCGCGCCUCCggccccucuCCUcUCCccguccgcucgcGGCGUUCCUCc -3' miRNA: 3'- -GUGUGGAGG---------GGAaAGG------------UCGCAAGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 75980 | 0.66 | 0.921157 |
Target: 5'- gACuCCccgCCCCUcUCCAccGCGgaCCCCc -3' miRNA: 3'- gUGuGGa--GGGGAaAGGU--CGCaaGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 74086 | 0.73 | 0.529067 |
Target: 5'- gGCGCCUCCCggggCCucGCGggCCCCg -3' miRNA: 3'- gUGUGGAGGGgaaaGGu-CGCaaGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 54714 | 0.73 | 0.5389 |
Target: 5'- cCGCGCCUCggggcgCCCUagcCCGGCGcgCCCCc -3' miRNA: 3'- -GUGUGGAG------GGGAaa-GGUCGCaaGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 88130 | 0.73 | 0.548794 |
Target: 5'- -uCGCCUCCCU----CAGCGUUCCCg -3' miRNA: 3'- guGUGGAGGGGaaagGUCGCAAGGGg -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 78435 | 0.73 | 0.558744 |
Target: 5'- gCGCACCUCCCgCUcaUCCAGCccgUCCUg -3' miRNA: 3'- -GUGUGGAGGG-GAa-AGGUCGca-AGGGg -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 145181 | 0.72 | 0.598983 |
Target: 5'- gGCACCcUCCCg--CCGGCGguaaCCCCg -3' miRNA: 3'- gUGUGGaGGGGaaaGGUCGCaa--GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 92467 | 0.71 | 0.649763 |
Target: 5'- cCGCGCCgccgUCCCCgaucgcgUCC-GCGUccUCCCCc -3' miRNA: 3'- -GUGUGG----AGGGGaa-----AGGuCGCA--AGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 1594 | 0.72 | 0.619274 |
Target: 5'- gCACGgCUCCCCgccUCCGG-GcgCCCCg -3' miRNA: 3'- -GUGUgGAGGGGaa-AGGUCgCaaGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 4107 | 0.72 | 0.588871 |
Target: 5'- gGCcguCCUCCCCggcgCCGGCGgggCCCUc -3' miRNA: 3'- gUGu--GGAGGGGaaa-GGUCGCaa-GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 4675 | 0.77 | 0.359458 |
Target: 5'- gCGCGCCUCgUCCaccUCCGGCGcgCCCCa -3' miRNA: 3'- -GUGUGGAG-GGGaa-AGGUCGCaaGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 151966 | 0.72 | 0.629438 |
Target: 5'- aGCcCCUCCCCgcgCgGGCGUcccgCCCCc -3' miRNA: 3'- gUGuGGAGGGGaaaGgUCGCAa---GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 116660 | 0.77 | 0.359458 |
Target: 5'- cCACGCCUCUCCgucucucgggUUUCCGGCacgCCCCa -3' miRNA: 3'- -GUGUGGAGGGG----------AAAGGUCGcaaGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 148676 | 0.73 | 0.568744 |
Target: 5'- aCGCGCC-CCCCggccgcgCCGGCGcgCCCg -3' miRNA: 3'- -GUGUGGaGGGGaaa----GGUCGCaaGGGg -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 756 | 0.71 | 0.639603 |
Target: 5'- gCGCGCCUCgCCUc-CCGGCGccgcgggCCCCu -3' miRNA: 3'- -GUGUGGAGgGGAaaGGUCGCaa-----GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 154242 | 0.71 | 0.670033 |
Target: 5'- cCACACCcgucccgCCUCUcUCCGGCGgggacgcgCCCCc -3' miRNA: 3'- -GUGUGGa------GGGGAaAGGUCGCaa------GGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 111515 | 0.74 | 0.49999 |
Target: 5'- uCACGCC-CCCCgcccgccggCCGGCuUUCCCCc -3' miRNA: 3'- -GUGUGGaGGGGaaa------GGUCGcAAGGGG- -5' |
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21482 | 3' | -56.2 | NC_004812.1 | + | 73367 | 0.73 | 0.548794 |
Target: 5'- gACGCCUCgCCC---CCGGUGUcCCCCa -3' miRNA: 3'- gUGUGGAG-GGGaaaGGUCGCAaGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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