miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 5' -52.8 NC_004812.1 + 156379 0.71 0.781243
Target:  5'- gGAGAGCGGgGCC-GCGGGGGccGGGGCu -3'
miRNA:   3'- -UUCUUGCUgCGGuUGUCUCCu-CUCUG- -5'
21482 5' -52.8 NC_004812.1 + 156328 0.7 0.844068
Target:  5'- cGGGAgGGgGCCGAgGGGGGGGGGGg -3'
miRNA:   3'- uUCUUgCUgCGGUUgUCUCCUCUCUg -5'
21482 5' -52.8 NC_004812.1 + 156200 0.69 0.880805
Target:  5'- gGGGGAgGGgGCCGcuggggagagggacGgGGGGGAGAGACg -3'
miRNA:   3'- -UUCUUgCUgCGGU--------------UgUCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 155910 0.67 0.937865
Target:  5'- ----cCGACGCCGACGGAGcuccggacccGGGGACg -3'
miRNA:   3'- uucuuGCUGCGGUUGUCUCc---------UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 155847 0.71 0.827018
Target:  5'- aGGGGcccGCGGCGCCG--GGAGGcGAGGCg -3'
miRNA:   3'- -UUCU---UGCUGCGGUugUCUCCuCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 155552 0.66 0.972629
Target:  5'- cGGGAGgGGCGgggGAgGGGGGAGGGGCg -3'
miRNA:   3'- -UUCUUgCUGCgg-UUgUCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 155262 0.73 0.701125
Target:  5'- gGGGGGCgcggcgGACGCCAAaccGGGGAGGGGCg -3'
miRNA:   3'- -UUCUUG------CUGCGGUUgu-CUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 154944 0.73 0.721728
Target:  5'- cGGGccGCGGCGCCGcggccaACGGGGGAGcGGCg -3'
miRNA:   3'- uUCU--UGCUGCGGU------UGUCUCCUCuCUG- -5'
21482 5' -52.8 NC_004812.1 + 154755 0.69 0.882979
Target:  5'- gAGGAGCGggccggggcuGCGCgGGgAGAGGGGAGGa -3'
miRNA:   3'- -UUCUUGC----------UGCGgUUgUCUCCUCUCUg -5'
21482 5' -52.8 NC_004812.1 + 153446 0.66 0.975354
Target:  5'- cGGGGGCGggggGCGCgGggggggGCGGAGGGGAGcGCg -3'
miRNA:   3'- -UUCUUGC----UGCGgU------UGUCUCCUCUC-UG- -5'
21482 5' -52.8 NC_004812.1 + 153184 0.72 0.740998
Target:  5'- gGGGGcgcgGCGGCGCCGgagggccGCcGGGGGGAGGCg -3'
miRNA:   3'- -UUCU----UGCUGCGGU-------UGuCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 152763 0.66 0.963159
Target:  5'- ---cGCGGCGaCCAcggcGCAGAGGGGcgGGGCc -3'
miRNA:   3'- uucuUGCUGC-GGU----UGUCUCCUC--UCUG- -5'
21482 5' -52.8 NC_004812.1 + 152639 0.68 0.912358
Target:  5'- cGGGcCGGCGCgCGGCGGGGGggcgccgggccuccgGGAGGCg -3'
miRNA:   3'- uUCUuGCUGCG-GUUGUCUCC---------------UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 152586 0.67 0.937865
Target:  5'- -cGGGCGGCGCgAgaggacGCGGAGGAGGcggagcGGCg -3'
miRNA:   3'- uuCUUGCUGCGgU------UGUCUCCUCU------CUG- -5'
21482 5' -52.8 NC_004812.1 + 152533 0.72 0.751992
Target:  5'- cGGAgGCGGCgcgGCCGGCGGAGGAGGaGCg -3'
miRNA:   3'- uUCU-UGCUG---CGGUUGUCUCCUCUcUG- -5'
21482 5' -52.8 NC_004812.1 + 152517 0.74 0.648704
Target:  5'- gGAGGACGGCcccGCCGgggccGCGGGGGAG-GACg -3'
miRNA:   3'- -UUCUUGCUG---CGGU-----UGUCUCCUCuCUG- -5'
21482 5' -52.8 NC_004812.1 + 151930 0.66 0.966538
Target:  5'- uGGGGCG-CGCCGGaGGuGGAcGAGGCg -3'
miRNA:   3'- uUCUUGCuGCGGUUgUCuCCU-CUCUG- -5'
21482 5' -52.8 NC_004812.1 + 151078 0.66 0.975354
Target:  5'- --cGACGACGaCGACGG-GGAG-GACg -3'
miRNA:   3'- uucUUGCUGCgGUUGUCuCCUCuCUG- -5'
21482 5' -52.8 NC_004812.1 + 150833 0.75 0.585419
Target:  5'- gAGGAACGcCGCgAGCGGAcGGGGAGAg -3'
miRNA:   3'- -UUCUUGCuGCGgUUGUCU-CCUCUCUg -5'
21482 5' -52.8 NC_004812.1 + 149674 0.68 0.91599
Target:  5'- cGGGGCGGgGUUGugGGGGGAGGGGa -3'
miRNA:   3'- uUCUUGCUgCGGUugUCUCCUCUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.