Results 1 - 20 of 238 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21482 | 5' | -52.8 | NC_004812.1 | + | 70659 | 1.07 | 0.00664 |
Target: 5'- cAAGAACGACGCCAACAGAGGAGAGACu -3' miRNA: 3'- -UUCUUGCUGCGGUUGUCUCCUCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 79441 | 0.73 | 0.721728 |
Target: 5'- cGGGGACGGCGCCGccGCGGGcGGGcugccggccGAGACg -3' miRNA: 3'- -UUCUUGCUGCGGU--UGUCU-CCU---------CUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 37202 | 0.72 | 0.731911 |
Target: 5'- gGGGAGCGGCGCCcccgggcacGCGGggggccccgggcAGGAGGGGCa -3' miRNA: 3'- -UUCUUGCUGCGGu--------UGUC------------UCCUCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 75125 | 0.66 | 0.976387 |
Target: 5'- cGAGAGCGAcggggggcgcguguaCGCCGuCGucGGGGAGGCc -3' miRNA: 3'- -UUCUUGCU---------------GCGGUuGUcuCCUCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 25325 | 0.75 | 0.585419 |
Target: 5'- gAGGAACGcCGCgAGCGGAcGGGGAGAg -3' miRNA: 3'- -UUCUUGCuGCGgUUGUCU-CCUCUCUg -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 35539 | 0.75 | 0.606455 |
Target: 5'- gGGGGGCggGACGCCcGCGcGGGGAGGGGCu -3' miRNA: 3'- -UUCUUG--CUGCGGuUGU-CUCCUCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 100858 | 0.75 | 0.617007 |
Target: 5'- cGAGGACGGgGCCGcgggggagGCGGGGGAG-GGCg -3' miRNA: 3'- -UUCUUGCUgCGGU--------UGUCUCCUCuCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 31629 | 0.74 | 0.627572 |
Target: 5'- cGGcGCGGuCGCCGGCGGGGGuGGGGGCg -3' miRNA: 3'- uUCuUGCU-GCGGUUGUCUCC-UCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 27008 | 0.74 | 0.648704 |
Target: 5'- gGAGGACGGCcccGCCGgggccGCGGGGGAG-GACg -3' miRNA: 3'- -UUCUUGCUG---CGGU-----UGUCUCCUCuCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 154944 | 0.73 | 0.721728 |
Target: 5'- cGGGccGCGGCGCCGcggccaACGGGGGAGcGGCg -3' miRNA: 3'- uUCU--UGCUGCGGU------UGUCUCCUCuCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 114476 | 0.74 | 0.659254 |
Target: 5'- -cGGGCGugGCCGcCGGGGGAaGGGCg -3' miRNA: 3'- uuCUUGCugCGGUuGUCUCCUcUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 49617 | 0.74 | 0.637084 |
Target: 5'- uGGGAGgGGCGCCcGCGGggcgggaGGGGGAGGCg -3' miRNA: 3'- -UUCUUgCUGCGGuUGUC-------UCCUCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 10146 | 0.79 | 0.39083 |
Target: 5'- aGGGAGCGAcagaCGgCGACGGGGGGGGGGCg -3' miRNA: 3'- -UUCUUGCU----GCgGUUGUCUCCUCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 29754 | 0.73 | 0.701125 |
Target: 5'- gGGGGGCgcggcgGACGCCAAaccGGGGAGGGGCg -3' miRNA: 3'- -UUCUUG------CUGCGGUUgu-CUCCUCUCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 62390 | 0.77 | 0.48347 |
Target: 5'- --cGGCGACGCCGGC-GAGGAGcAGACc -3' miRNA: 3'- uucUUGCUGCGGUUGuCUCCUC-UCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 98840 | 0.74 | 0.627572 |
Target: 5'- -cGGGCGGCGCgGACGGcGGGGAGGu -3' miRNA: 3'- uuCUUGCUGCGgUUGUCuCCUCUCUg -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 136484 | 0.73 | 0.721728 |
Target: 5'- -uGGGCGACGCgGgccucgucuggGCGGAGGAGAG-Ca -3' miRNA: 3'- uuCUUGCUGCGgU-----------UGUCUCCUCUCuG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 20102 | 0.72 | 0.730897 |
Target: 5'- gAGGAGCG-CGCCGcgcgcagcggcgcGCGGGGGAGcGGACc -3' miRNA: 3'- -UUCUUGCuGCGGU-------------UGUCUCCUC-UCUG- -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 138316 | 0.77 | 0.49332 |
Target: 5'- gGAGggUGGCGCCGgcGCGGAGGAGGc-- -3' miRNA: 3'- -UUCuuGCUGCGGU--UGUCUCCUCUcug -5' |
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21482 | 5' | -52.8 | NC_004812.1 | + | 45285 | 0.75 | 0.606455 |
Target: 5'- -cGGGCGACcccCCGACAGgaacAGGAGAGACu -3' miRNA: 3'- uuCUUGCUGc--GGUUGUC----UCCUCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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